FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0432, 406 aa
  1>>>pF1KE0432 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1045+/-0.000767; mu= 18.1153+/- 0.046
 mean_var=57.5351+/-11.444, 0's: 0 Z-trim(107.2): 12  B-trim: 0 in 0/51
 Lambda= 0.169086
 statistics sampled from 9410 (9416) to 9410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS11619.1 VMP1 gene_id:81671|Hs108|chr17         ( 406) 2711 669.4 1.7e-192


>>CCDS11619.1 VMP1 gene_id:81671|Hs108|chr17              (406 aa)
 initn: 2711 init1: 2711 opt: 2711  Z-score: 3569.4  bits: 669.4 E(32554): 1.7e-192
Smith-Waterman score: 2711; 99.8% identity (99.8% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KE0 MAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ILVILKEWTSKLWHRQSIVVSFLLLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILVILKEWTSKLWHRQSIVVSFLLLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTIFL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS11 ILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 MHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQG
              310       320       330       340       350       360

              370       380       390       400      
pF1KE0 ENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK
              370       380       390       400      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:28:18 2016 done: Thu Nov  3 09:28:19 2016
 Total Scan time:  2.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]