Result of FASTA (omim) for
pF1KE0431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0431, 336 aa
1>>>pF1KE0431 336 - 336 aa - 336 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6250+/-0.00046; mu= 14.5283+/- 0.028
mean_var=67.4740+/-13.468, 0's: 0 Z-trim(109.1): 59 B-trim: 79 in 2/49
Lambda= 0.156137
statistics sampled from 17196 (17238) to 17196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.563), E-opt: 0.2 (0.202), width: 16
Scan time: 7.200
The best scores are: opt bits E(85289)
NP_001002010 (OMIM: 266120,606224) cytosolic 5'-nu ( 336) 2175 499.2 5.1e-141
NP_001002009 (OMIM: 266120,606224) cytosolic 5'-nu ( 297) 1878 432.3 6.3e-121
NP_057573 (OMIM: 266120,606224) cytosolic 5'-nucle ( 297) 1878 432.3 6.3e-121
XP_011513711 (OMIM: 266120,606224) PREDICTED: cyto ( 285) 1866 429.6 3.9e-120
NP_001159590 (OMIM: 266120,606224) cytosolic 5'-nu ( 285) 1866 429.6 3.9e-120
>>NP_001002010 (OMIM: 266120,606224) cytosolic 5'-nucleo (336 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2652.8 bits: 499.2 E(85289): 5.1e-141
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)
10 20 30 40 50 60
pF1KE0 MRAPSMDRAAVARVGAVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRAPSMDRAAVARVGAVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDEC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL
250 260 270 280 290 300
310 320 330
pF1KE0 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
::::::::::::::::::::::::::::::::::::
NP_001 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
310 320 330
>>NP_001002009 (OMIM: 266120,606224) cytosolic 5'-nucleo (297 aa)
initn: 1878 init1: 1878 opt: 1878 Z-score: 2292.1 bits: 432.3 E(85289): 6.3e-121
Smith-Waterman score: 1878; 99.3% identity (100.0% similar) in 288 aa overlap (49-336:10-297)
20 30 40 50 60 70
pF1KE0 SASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKG
..::::::::::::::::::::::::::::
NP_001 MTNQESAVHVKMMPEFQKSSVRIKNPTRVEEIICGLIKG
10 20 30
80 90 100 110 120 130
pF1KE0 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE0 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE0 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
220 230 240 250 260 270
320 330
pF1KE0 LVQDESLEVANSILQKIL
::::::::::::::::::
NP_001 LVQDESLEVANSILQKIL
280 290
>>NP_057573 (OMIM: 266120,606224) cytosolic 5'-nucleotid (297 aa)
initn: 1878 init1: 1878 opt: 1878 Z-score: 2292.1 bits: 432.3 E(85289): 6.3e-121
Smith-Waterman score: 1878; 99.3% identity (100.0% similar) in 288 aa overlap (49-336:10-297)
20 30 40 50 60 70
pF1KE0 SASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKG
..::::::::::::::::::::::::::::
NP_057 MTNQESAVHVKMMPEFQKSSVRIKNPTRVEEIICGLIKG
10 20 30
80 90 100 110 120 130
pF1KE0 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE0 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE0 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
220 230 240 250 260 270
320 330
pF1KE0 LVQDESLEVANSILQKIL
::::::::::::::::::
NP_057 LVQDESLEVANSILQKIL
280 290
>>XP_011513711 (OMIM: 266120,606224) PREDICTED: cytosoli (285 aa)
initn: 1866 init1: 1866 opt: 1866 Z-score: 2277.7 bits: 429.6 E(85289): 3.9e-120
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 285 aa overlap (52-336:1-285)
30 40 50 60 70 80
pF1KE0 VCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAA
::::::::::::::::::::::::::::::
XP_011 MPEFQKSSVRIKNPTRVEEIICGLIKGGAA
10 20 30
90 100 110 120 130 140
pF1KE0 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE0 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
220 230 240 250 260 270
330
pF1KE0 DESLEVANSILQKIL
:::::::::::::::
XP_011 DESLEVANSILQKIL
280
>>NP_001159590 (OMIM: 266120,606224) cytosolic 5'-nucleo (285 aa)
initn: 1866 init1: 1866 opt: 1866 Z-score: 2277.7 bits: 429.6 E(85289): 3.9e-120
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 285 aa overlap (52-336:1-285)
30 40 50 60 70 80
pF1KE0 VCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAA
::::::::::::::::::::::::::::::
NP_001 MPEFQKSSVRIKNPTRVEEIICGLIKGGAA
10 20 30
90 100 110 120 130 140
pF1KE0 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE0 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
220 230 240 250 260 270
330
pF1KE0 DESLEVANSILQKIL
:::::::::::::::
NP_001 DESLEVANSILQKIL
280
336 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:39:15 2016 done: Thu Nov 3 09:39:16 2016
Total Scan time: 7.200 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]