FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0431, 336 aa
  1>>>pF1KE0431 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9521+/-0.00107; mu= 12.5143+/- 0.064
 mean_var=64.1435+/-13.045, 0's: 0 Z-trim(102.7): 25  B-trim: 129 in 2/46
 Lambda= 0.160139
 statistics sampled from 7083 (7090) to 7083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.581), E-opt: 0.2 (0.218), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS34616.1 NT5C3A gene_id:51251|Hs108|chr7        ( 336) 2175 511.4 4.1e-145
CCDS34617.1 NT5C3A gene_id:51251|Hs108|chr7        ( 297) 1878 442.8 1.6e-124
CCDS55101.1 NT5C3A gene_id:51251|Hs108|chr7        ( 285) 1866 440.0 1.1e-123
CCDS11410.2 NT5C3B gene_id:115024|Hs108|chr17      ( 300) 1174 280.2 1.5e-75


>>CCDS34616.1 NT5C3A gene_id:51251|Hs108|chr7             (336 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2718.7  bits: 511.4 E(32554): 4.1e-145
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE0 MRAPSMDRAAVARVGAVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRAPSMDRAAVARVGAVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL
              250       260       270       280       290       300

              310       320       330      
pF1KE0 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
       ::::::::::::::::::::::::::::::::::::
CCDS34 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
              310       320       330      

>>CCDS34617.1 NT5C3A gene_id:51251|Hs108|chr7             (297 aa)
 initn: 1878 init1: 1878 opt: 1878  Z-score: 2348.8  bits: 442.8 E(32554): 1.6e-124
Smith-Waterman score: 1878; 99.3% identity (100.0% similar) in 288 aa overlap (49-336:10-297)

       20        30        40        50        60        70        
pF1KE0 SASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKG
                                     ..::::::::::::::::::::::::::::
CCDS34                      MTNQESAVHVKMMPEFQKSSVRIKNPTRVEEIICGLIKG
                                    10        20        30         

       80        90       100       110       120       130        
pF1KE0 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDP
      40        50        60        70        80        90         

      140       150       160       170       180       190        
pF1KE0 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIP
     100       110       120       130       140       150         

      200       210       220       230       240       250        
pF1KE0 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALR
     160       170       180       190       200       210         

      260       270       280       290       300       310        
pF1KE0 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIV
     220       230       240       250       260       270         

      320       330      
pF1KE0 LVQDESLEVANSILQKIL
       ::::::::::::::::::
CCDS34 LVQDESLEVANSILQKIL
     280       290       

>>CCDS55101.1 NT5C3A gene_id:51251|Hs108|chr7             (285 aa)
 initn: 1866 init1: 1866 opt: 1866  Z-score: 2334.1  bits: 440.0 E(32554): 1.1e-123
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 285 aa overlap (52-336:1-285)

              30        40        50        60        70        80 
pF1KE0 VCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAA
                                     ::::::::::::::::::::::::::::::
CCDS55                               MPEFQKSSVRIKNPTRVEEIICGLIKGGAA
                                             10        20        30

              90       100       110       120       130       140 
pF1KE0 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLT
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KE0 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFI
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KE0 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KE0 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ
              220       230       240       250       260       270

             330      
pF1KE0 DESLEVANSILQKIL
       :::::::::::::::
CCDS55 DESLEVANSILQKIL
              280     

>>CCDS11410.2 NT5C3B gene_id:115024|Hs108|chr17           (300 aa)
 initn: 1174 init1: 1174 opt: 1174  Z-score: 1469.7  bits: 280.2 E(32554): 1.5e-75
Smith-Waterman score: 1174; 57.1% identity (86.5% similar) in 289 aa overlap (48-336:1-289)

        20        30        40        50        60        70       
pF1KE0 ASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIK
                                     . : .  ..:..: ...: ::.::. .: :
CCDS11                               MAEEVSTLMKATVLMRQPGRVQEIVGALRK
                                             10        20        30

        80        90       100       110       120       130       
pF1KE0 GGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVD
       ::. .::.:.:::::::::.:.:::::. .::.:: :....::::.:  : ..:: ::.:
CCDS11 GGGDRLQVISDFDMTLSRFAYNGKRCPSSYNILDNSKIISEECRKELTALLHHYYPIEID
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KE0 PVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSI
       :  ::.:: :.::::.::.:.:: :: . : .. ..: ::..::.:::..::. : ...:
CCDS11 PHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQVVRESNAMLREGYKTFFNTLYHNNI
              100       110       120       130       140       150

       200       210       220       230       240       250       
pF1KE0 PVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGAL
       :.:::::::::.:::.:::  :.:::...:::.:::.: : :.::::.:::..::...: 
CCDS11 PLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFNEDGFLQGFKGQLIHTYNKNSSAC
              160       170       180       190       200       210

       260       270       280       290       300       310       
pF1KE0 RNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDI
       .:. ::.::. ..:.:::::: ::: ::::: .:..:::::.:::.:.:  :.:::::::
CCDS11 ENSGYFQQLEGKTNVILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDI
              220       230       240       250       260       270

       320       330                 
pF1KE0 VLVQDESLEVANSILQKIL           
       :: .::.:.:.:..::.::           
CCDS11 VLEKDETLDVVNGLLQHILCQGVQLEMQGP
              280       290       300




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:39:14 2016 done: Thu Nov  3 09:39:14 2016
 Total Scan time:  2.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]