FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0426, 383 aa
  1>>>pF1KE0426 383 - 383 aa - 383 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4595+/-0.000744; mu= 16.3478+/- 0.045
 mean_var=79.2579+/-16.790, 0's: 0 Z-trim(109.1): 35  B-trim: 484 in 1/52
 Lambda= 0.144063
 statistics sampled from 10637 (10651) to 10637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS8278.1 PRSS23 gene_id:11098|Hs108|chr11        ( 383) 2672 564.8 4.5e-161
CCDS4999.1 PRSS35 gene_id:167681|Hs108|chr6        ( 413)  805 176.8 3.1e-44


>>CCDS8278.1 PRSS23 gene_id:11098|Hs108|chr11             (383 aa)
 initn: 2672 init1: 2672 opt: 2672  Z-score: 3005.2  bits: 564.8 E(32554): 4.5e-161
Smith-Waterman score: 2672; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KE0 MAGIPGLLFLLFFLLCAVGQVSPYSAPWKPTWPAYRLPVVLPQSTLNLAKPDFGAEAKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAGIPGLLFLLFFLLCAVGQVSPYSAPWKPTWPAYRLPVVLPQSTLNLAKPDFGAEAKLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSSSGDGAQHRDSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSSSGDGAQHRDSGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNAND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNAND
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVR
              310       320       330       340       350       360

              370       380   
pF1KE0 ITPLKYAQICYWIKGNYLDCREG
       :::::::::::::::::::::::
CCDS82 ITPLKYAQICYWIKGNYLDCREG
              370       380   

>>CCDS4999.1 PRSS35 gene_id:167681|Hs108|chr6             (413 aa)
 initn: 1368 init1: 789 opt: 805  Z-score: 907.6  bits: 176.8 E(32554): 3.1e-44
Smith-Waterman score: 1333; 48.6% identity (70.3% similar) in 414 aa overlap (7-383:5-413)

               10        20        30        40        50        60
pF1KE0 MAGIPGLLFLLFFLLCAVGQVSPYSAPWKPTWPAYRLPVVLPQSTLNLAKPDFGAEAKLE
             ::.:.::   .   ..     :   :   ..: .. . :..:..: : :.::. 
CCDS49   MENMLLWLIFFTP-GWTLIDGSEMEWDFMWHLRKVPRIVSERTFHLTSPAFEADAKMM
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KE0 VSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSSSGDGAQHRDSGS
       :.. :: .:.:  : :.  : ..::::::.. ::.:: :.: .  :         ..  .
CCDS49 VNTVCGIECQKELPTPSLSELEDYLSYETVFENGTRTLTRVKVQDLVLEPT----QNITT
        60        70        80        90       100           110   

               130       140       150       160       170         
pF1KE0 SGKS-RRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHD
       .: : :::::.:: ::::::. : :: :.::::.:::::::.: :.. .::::::::.::
CCDS49 KGVSVRRKRQVYGTDSRFSILDKRFLTNFPFSTAVKLSTGCSGILISPQHVLTAAHCVHD
           120       130       140       150       160       170   

     180       190       200                   210                 
pF1KE0 GKTYVKGTQKLRVGFLKPKFKDGG---RGAN---------DSTSAMPEQMK---------
       :: ::::..:::::.:: . :.::   ::..         :.  .  :...         
CCDS49 GKDYVKGSKKLRVGLLKMRNKSGGKKRRGSKRSRREASGGDQREGTREHLRERAKGGRRR
           180       190       200       210       220       230   

                     220       230       240       250       260   
pF1KE0 ---------------FQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKI
                      ::: ::: ::.:::: .:. .:  .::::::::::. ::.:.:..
CCDS49 KKSGRGQRIAEGRPSFQWTRVKNTHIPKGWARGGMGDATLDYDYALLELKRAHKKKYMEL
           240       250       260       270       280       290   

           270       280       290       300       310       320   
pF1KE0 GVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVR
       :.::  :..::: :::::.::::  .::::::.:.::. ::::: :::. :..:::::.:
CCDS49 GISPTIKKMPGGMIHFSGFDNDRADQLVYRFCSVSDESNDLLYQYCDAESGSTGSGVYLR
           300       310       320       330       340       350   

           330       340       350       360       370       380   
pF1KE0 MWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG
       .   ....:.::::...:::::::..:  .:.::::::::::::::: ::.::  .:  :
CCDS49 LKDPDKKNWKRKIIAVYSGHQWVDVHGVQKDYNVAVRITPLKYAQICLWIHGNDANCAYG
           360       370       380       390       400       410   




383 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:26:38 2016 done: Thu Nov  3 10:26:38 2016
 Total Scan time:  2.490 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]