FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0424, 470 aa
  1>>>pF1KE0424 470 - 470 aa - 470 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2961+/-0.000392; mu= 17.6803+/- 0.024
 mean_var=65.7133+/-13.632, 0's: 0 Z-trim(112.3): 5  B-trim: 977 in 1/50
 Lambda= 0.158215
 statistics sampled from 21217 (21221) to 21217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.249), width:  16
 Scan time:  9.800

The best scores are:                                      opt bits E(85289)
NP_001174 (OMIM: 300197,300972) V-type proton ATPa ( 470) 3096 715.8 6.3e-206
XP_011529481 (OMIM: 300197,300972) PREDICTED: V-ty ( 281) 1870 435.8 7.1e-122


>>NP_001174 (OMIM: 300197,300972) V-type proton ATPase s  (470 aa)
 initn: 3096 init1: 3096 opt: 3096  Z-score: 3818.1  bits: 715.8 E(85289): 6.3e-206
Smith-Waterman score: 3096; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KE0 MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS
              370       380       390       400       410       420

              430       440       450       460       470
pF1KE0 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV
              430       440       450       460       470

>>XP_011529481 (OMIM: 300197,300972) PREDICTED: V-type p  (281 aa)
 initn: 1870 init1: 1870 opt: 1870  Z-score: 2309.0  bits: 435.8 E(85289): 7.1e-122
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 281 aa overlap (190-470:1-281)

     160       170       180       190       200       210         
pF1KE0 DLATLRELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTA
                                     ::::::::::::::::::::::::::::::
XP_011                               MAPREVLTGNDEVIGQVLSTLKSEDVPYTA
                                             10        20        30

     220       230       240       250       260       270         
pF1KE0 ALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYK
               40        50        60        70        80        90

     280       290       300       310       320       330         
pF1KE0 DQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHW
              100       110       120       130       140       150

     340       350       360       370       380       390         
pF1KE0 FTMERLEVHSNGSVAYFNASQVTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FTMERLEVHSNGSVAYFNASQVTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQD
              160       170       180       190       200       210

     400       410       420       430       440       450         
pF1KE0 FQIQAFNVMGEQFSYASDCASFFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQIQAFNVMGEQFSYASDCASFFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDH
              220       230       240       250       260       270

     460       470
pF1KE0 KGPTISLTQIV
       :::::::::::
XP_011 KGPTISLTQIV
              280 




470 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:39:51 2016 done: Thu Nov  3 10:39:52 2016
 Total Scan time:  9.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]