FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0424, 470 aa
  1>>>pF1KE0424 470 - 470 aa - 470 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8165+/-0.000905; mu= 14.7821+/- 0.054
 mean_var=66.6755+/-13.356, 0's: 0 Z-trim(105.6): 9  B-trim: 0 in 0/50
 Lambda= 0.157069
 statistics sampled from 8524 (8527) to 8524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.262), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS35451.1 ATP6AP1 gene_id:537|Hs108|chrX         ( 470) 3096 710.6 8.7e-205
CCDS34196.1 ATP6AP1L gene_id:92270|Hs108|chr5      ( 224)  356 89.6 3.6e-18


>>CCDS35451.1 ATP6AP1 gene_id:537|Hs108|chrX              (470 aa)
 initn: 3096 init1: 3096 opt: 3096  Z-score: 3790.1  bits: 710.6 E(32554): 8.7e-205
Smith-Waterman score: 3096; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KE0 MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MMAAMATARVRMGPRCAQALWRMPWLPVFLSLAAAAAAAAAEQQVPLVLWSSDRDLWAPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ADTHEGHITSDLQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCAS
              370       380       390       400       410       420

              430       440       450       460       470
pF1KE0 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV
              430       440       450       460       470

>>CCDS34196.1 ATP6AP1L gene_id:92270|Hs108|chr5           (224 aa)
 initn: 332 init1: 198 opt: 356  Z-score: 439.8  bits: 89.6 E(32554): 3.6e-18
Smith-Waterman score: 356; 37.0% identity (70.8% similar) in 154 aa overlap (320-469:40-192)

     290       300       310       320       330       340         
pF1KE0 FGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHS
                                     .....:::.:    .: . ::...:.:. :
CCDS34 KLVLKTAKDSRLGLNSKWLSLKLGDAGNPRSLAIRFILTNY-NKLSIQSWFSLRRVEIIS
      10        20        30        40        50         60        

     350        360       370       380       390          400     
pF1KE0 NGSV-AYFNASQVTGPSIYSFHCEYVSSLSKKGSLLVARTQP---SPWQMMLQDFQIQAF
       :.:. : :: . : .:: ::..:. :.::..  .::.        : :.. . :::::.:
CCDS34 NNSIQAVFNPTGVYAPSGYSYRCQRVGSLQQDQALLLPSDTDDGSSLWEVTFIDFQIQGF
       70        80        90       100       110       120        

         410       420       430       440       450       460     
pF1KE0 NVMGEQFSYASDCASFFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTIS
        . : .:. :.:::: :::.. .::  ::..:....:.:::.. :. .:.  :  .    
CCDS34 AIKGGRFTKAQDCASSFSPAFLIGLAMSLILLLVLAYALHMLIYLRYLDQQYDLIASPAH
      130       140       150       160       170       180        

         470                               
pF1KE0 LTQIV                               
       ..:.                                
CCDS34 FSQLKARDTAEEKELLRSQGAECYKLRSQQISKIYV
      190       200       210       220    




470 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:39:50 2016 done: Thu Nov  3 10:39:51 2016
 Total Scan time:  2.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]