FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0421, 189 aa
  1>>>pF1KE0421 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0101+/-0.000735; mu= 14.3906+/- 0.044
 mean_var=57.2834+/-11.494, 0's: 0 Z-trim(107.8): 11  B-trim: 0 in 0/51
 Lambda= 0.169457
 statistics sampled from 9830 (9835) to 9830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS14763.1 FUNDC2 gene_id:65991|Hs108|chrX        ( 189) 1233 309.2 9.8e-85
CCDS14263.1 FUNDC1 gene_id:139341|Hs108|chrX       ( 155)  631 162.0 1.7e-40


>>CCDS14763.1 FUNDC2 gene_id:65991|Hs108|chrX             (189 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1634.7  bits: 309.2 E(32554): 9.8e-85
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE0 METSAPRAGSQVVATTARHSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 METSAPRAGSQVVATTARHSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKQPWWRKLFGQESGPSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQPWWRKLFGQESGPSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVRSKAEEVVSFVKKNVLVTGGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVRSKAEEVVSFVKKNVLVTGGFF
              130       140       150       160       170       180

                
pF1KE0 GGFLLGMAS
       :::::::::
CCDS14 GGFLLGMAS
                

>>CCDS14263.1 FUNDC1 gene_id:139341|Hs108|chrX            (155 aa)
 initn: 523 init1: 507 opt: 631  Z-score: 840.6  bits: 162.0 E(32554): 1.7e-40
Smith-Waterman score: 631; 57.7% identity (88.7% similar) in 142 aa overlap (48-189:15-155)

        20        30        40        50        60        70       
pF1KE0 RHSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFAKKQPWWRKLFGQESGPS
                                     . ..: :::.:.:... :: ..::. ::: 
CCDS14                 MATRNPPPQDYESDDDSYEVLDLTEYARRHQWWNRVFGHSSGPM
                               10        20        30        40    

        80        90       100       110       120       130       
pF1KE0 AEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEK
       .::::::::. .:::::::.::.::::::::::::::::.:::.:.:.::...::.::::
CCDS14 VEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQIASHSGYVQIDWKRVEK
           50        60        70        80        90       100    

       140       150       160       170       180         
pF1KE0 DMKKAKEQLKIRKSNQIPTEVRSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS
       :..:::.:.: ...:.   :. .  ::.. :.:.:.....:: ::::::.::
CCDS14 DVNKAKRQIK-KRANKAAPEINNLIEEATEFIKQNIVISSGFVGGFLLGLAS
          110        120       130       140       150     




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:56:40 2016 done: Thu Nov  3 10:56:41 2016
 Total Scan time:  1.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]