FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0419, 161 aa
  1>>>pF1KE0419 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6119+/-0.000778; mu= 9.9068+/- 0.046
 mean_var=63.3165+/-13.040, 0's: 0 Z-trim(106.6): 20  B-trim: 502 in 1/50
 Lambda= 0.161182
 statistics sampled from 9074 (9076) to 9074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.279), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS8424.1 THY1 gene_id:7070|Hs108|chr11           ( 161) 1020 245.6 9.9e-66


>>CCDS8424.1 THY1 gene_id:7070|Hs108|chr11                (161 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1293.5  bits: 245.6 E(32554): 9.9e-66
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE0 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
               70        80        90       100       110       120

              130       140       150       160 
pF1KE0 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
       :::::::::::::::::::::::::::::::::::::::::
CCDS84 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL
              130       140       150       160 




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:10:02 2016 done: Thu Nov  3 11:10:03 2016
 Total Scan time:  1.890 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]