FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0414, 186 aa
  1>>>pF1KE0414 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2974+/-0.000693; mu= 12.5309+/- 0.042
 mean_var=55.1030+/-10.712, 0's: 0 Z-trim(107.9): 18  B-trim: 2 in 1/52
 Lambda= 0.172777
 statistics sampled from 9873 (9879) to 9873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.303), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS13732.1 SPATC1L gene_id:84221|Hs108|chr21      ( 186) 1215 310.5 3.9e-85
CCDS46653.1 SPATC1L gene_id:84221|Hs108|chr21      ( 340) 1215 310.5 6.8e-85
CCDS6413.2 SPATC1 gene_id:375686|Hs108|chr8        ( 591)  515 136.1 3.8e-32


>>CCDS13732.1 SPATC1L gene_id:84221|Hs108|chr21           (186 aa)
 initn: 1215 init1: 1215 opt: 1215  Z-score: 1641.9  bits: 310.5 E(32554): 3.9e-85
Smith-Waterman score: 1215; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE0 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVRPKKVCFSESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDG
              130       140       150       160       170       180

             
pF1KE0 KPLFAW
       ::::::
CCDS13 KPLFAW
             

>>CCDS46653.1 SPATC1L gene_id:84221|Hs108|chr21           (340 aa)
 initn: 1215 init1: 1215 opt: 1215  Z-score: 1637.6  bits: 310.5 E(32554): 6.8e-85
Smith-Waterman score: 1215; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:155-340)

                                             10        20        30
pF1KE0                               MVRPKKVCFSESSLPTGDRTRRSYYLNEIQ
                                     ::::::::::::::::::::::::::::::
CCDS46 SHRGTDRKLSPLLSPLQDSLVDKTLLEPREMVRPKKVCFSESSLPTGDRTRRSYYLNEIQ
          130       140       150       160       170       180    

               40        50        60        70        80        90
pF1KE0 SFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDE
          190       200       210       220       230       240    

              100       110       120       130       140       150
pF1KE0 RKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALR
          250       260       270       280       290       300    

              160       170       180      
pF1KE0 KLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW
       ::::::::::::::::::::::::::::::::::::
CCDS46 KLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW
          310       320       330       340

>>CCDS6413.2 SPATC1 gene_id:375686|Hs108|chr8             (591 aa)
 initn: 477 init1: 386 opt: 515  Z-score: 690.7  bits: 136.1 E(32554): 3.8e-32
Smith-Waterman score: 515; 52.7% identity (82.7% similar) in 150 aa overlap (40-186:444-591)

      10        20        30        40        50        60         
pF1KE0 SESSLPTGDRTRRSYYLNEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTV
                                     :.:::::::::::::. .::  .:::::::
CCDS64 SMMEVERKLAHRKTSKFPENPRESKQLAWERLVGEIAFQLDRRILSSIFPERVRLYGFTV
           420       430       440       450       460       470   

      70        80        90       100       110       120         
pF1KE0 ANIPEKIEQTSTKSLDGSVDERKLRELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYG
       .:::::: :.: .  : ..::.  ..:::::...  ::..:::.  ::::..: :.:.::
CCDS64 SNIPEKIIQASLNPSDHKLDEKLCQRLTQRYVSVMNRLQSLGYNGRVHPALTEQLVNAYG
           480       490       500       510       520       530   

     130       140          150       160       170       180      
pF1KE0 ILKQRPDLRANPLHSSPAA---LRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLFAW
       ::..::.: :.  ...: .   :...:...: : .:.:.::::.:: .:...::::.: :
CCDS64 ILRERPELAAS--EGGPYTVDFLQRVVVETVHPGMLADALLLLSCLSQLAHDDGKPMFIW
           540         550       560       570       580       590 




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:38:31 2016 done: Thu Nov  3 11:38:32 2016
 Total Scan time:  2.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]