FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0412, 243 aa
  1>>>pF1KE0412 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0824+/-0.000699; mu= 17.7079+/- 0.042
 mean_var=88.0122+/-17.637, 0's: 0 Z-trim(112.0): 11  B-trim: 0 in 0/51
 Lambda= 0.136711
 statistics sampled from 12798 (12807) to 12798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.393), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS8707.1 SSPN gene_id:8082|Hs108|chr12           ( 243) 1661 336.6 8.9e-93
CCDS44850.1 SSPN gene_id:8082|Hs108|chr12          ( 140)  947 195.6 1.5e-50


>>CCDS8707.1 SSPN gene_id:8082|Hs108|chr12                (243 aa)
 initn: 1661 init1: 1661 opt: 1661  Z-score: 1779.1  bits: 336.6 E(32554): 8.9e-93
Smith-Waterman score: 1661; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE0 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ
              190       200       210       220       230       240

          
pF1KE0 QKI
       :::
CCDS87 QKI
          

>>CCDS44850.1 SSPN gene_id:8082|Hs108|chr12               (140 aa)
 initn: 947 init1: 947 opt: 947  Z-score: 1021.1  bits: 195.6 E(32554): 1.5e-50
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (104-243:1-140)

            80        90       100       110       120       130   
pF1KE0 MASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYFLLSALGL
                                     ::::::::::::::::::::::::::::::
CCDS44                               MLCVSYQVDERTCIQFSMKLLYFLLSALGL
                                             10        20        30

           140       150       160       170       180       190   
pF1KE0 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCTSVTGTFKL
               40        50        60        70        80        90

           200       210       220       230       240   
pF1KE0 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQQKI
              100       110       120       130       140




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:42:37 2016 done: Thu Nov  3 11:42:37 2016
 Total Scan time:  2.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]