FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0410, 185 aa
  1>>>pF1KE0410 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6161+/-0.000624; mu= 17.2838+/- 0.038
 mean_var=67.6208+/-13.336, 0's: 0 Z-trim(111.5): 10  B-trim: 5 in 1/52
 Lambda= 0.155967
 statistics sampled from 12428 (12432) to 12428 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.382), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS1408.1 TMEM9 gene_id:252839|Hs108|chr1         ( 183) 1217 281.8 1.6e-76
CCDS73001.1 TMEM9 gene_id:252839|Hs108|chr1        ( 186) 1201 278.2   2e-75
CCDS7796.1 TMEM9B gene_id:56674|Hs108|chr11        ( 198)  697 164.8 2.9e-41
CCDS66021.1 TMEM9B gene_id:56674|Hs108|chr11       ( 124)  434 105.5 1.3e-23


>>CCDS1408.1 TMEM9 gene_id:252839|Hs108|chr1              (183 aa)
 initn: 859 init1: 859 opt: 1217  Z-score: 1487.2  bits: 281.8 E(32554): 1.6e-76
Smith-Waterman score: 1217; 98.9% identity (98.9% similar) in 185 aa overlap (1-185:1-183)

               10        20        30        40        50        60
pF1KE0 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNCLHV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::  :::::
CCDS14 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NCLHV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE0 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDR
      120       130       140       150       160       170        

            
pF1KE0 HKMLS
       :::::
CCDS14 HKMLS
      180   

>>CCDS73001.1 TMEM9 gene_id:252839|Hs108|chr1             (186 aa)
 initn: 986 init1: 859 opt: 1201  Z-score: 1467.7  bits: 278.2 E(32554): 2e-75
Smith-Waterman score: 1201; 97.3% identity (97.3% similar) in 188 aa overlap (1-185:1-186)

               10        20           30        40        50       
pF1KE0 MKLLSLVAVVGCLLVPPAEANK---SSEDIRCKCICPPYRNISGHIYNQNVSQKDCCSNC
       ::::::::::::::::::::::   :::::::::::::::::::::::::::::::  ::
CCDS73 MKLLSLVAVVGCLLVPPAEANKVRESSEDIRCKCICPPYRNISGHIYNQNVSQKDC--NC
               10        20        30        40        50          

        60        70        80        90       100       110       
pF1KE0 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPL
       60        70        80        90       100       110        

       120       130       140       150       160       170       
pF1KE0 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IRKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTV
      120       130       140       150       160       170        

       180     
pF1KE0 FDRHKMLS
       ::::::::
CCDS73 FDRHKMLS
      180      

>>CCDS7796.1 TMEM9B gene_id:56674|Hs108|chr11             (198 aa)
 initn: 330 init1: 330 opt: 697  Z-score: 854.4  bits: 164.8 E(32554): 2.9e-41
Smith-Waterman score: 697; 57.6% identity (81.0% similar) in 184 aa overlap (4-185:17-198)

                            10        20        30        40       
pF1KE0              MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQN
                       :: .:.   ::.  ..: :. ::.:::::::::.. ::::::.:
CCDS77 MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKN
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KE0 VSQKDCCSNCLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLY
       .:::::  .:::::::::: : ::::::: :::.:::::..:::: :.::::..: ::::
CCDS77 ISQKDC--DCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLY
                 70        80        90       100       110        

       110        120       130       140       150        160     
pF1KE0 MAFLMLVDPLI-RKPDAYTEQLHNEEENEDARSMAAAAASLGGPRANT-VLERVEGAQQR
       :..: ::.:.. :.  .... ......  : . .: :   :.  :. . ::..:: ::::
CCDS77 MVYLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRSRANVLNKVEYAQQR
      120       130       140       150       160       170        

         170       180     
pF1KE0 WKLQVQEQRKTVFDRHKMLS
       ::::::::::.::::: .::
CCDS77 WKLQVQEQRKSVFDRHVVLS
      180       190        

>>CCDS66021.1 TMEM9B gene_id:56674|Hs108|chr11            (124 aa)
 initn: 426 init1: 274 opt: 434  Z-score: 537.2  bits: 105.5 E(32554): 1.3e-23
Smith-Waterman score: 434; 55.6% identity (80.6% similar) in 124 aa overlap (64-185:1-124)

            40        50        60        70        80        90   
pF1KE0 PPYRNISGHIYNQNVSQKDCCSNCLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVI
                                     ::: : ::::::: :::.:::::..:::: 
CCDS66                               MPVRGPDVEAYCLRCECKYEERSSVTIKVT
                                             10        20        30

           100       110        120       130       140       150  
pF1KE0 IVIYLSVVGALLLYMAFLMLVDPLI-RKPDAYTEQLHNEEENEDARSMAAAAASLGGPRA
       :.::::..: :::::..: ::.:.. :.  .... ......  : . .: :   :.  :.
CCDS66 IIIYLSILGLLLLYMVYLTLVEPILKRRLFGHAQLIQSDDDIGDHQPFANAHDVLARSRS
               40        50        60        70        80        90

             160       170       180     
pF1KE0 NT-VLERVEGAQQRWKLQVQEQRKTVFDRHKMLS
        . ::..:: ::::::::::::::.::::: .::
CCDS66 RANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
              100       110       120    




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:52:01 2016 done: Thu Nov  3 11:52:01 2016
 Total Scan time:  2.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]