FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0403, 213 aa
  1>>>pF1KE0403 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9057+/-0.000751; mu= 15.5482+/- 0.045
 mean_var=57.9177+/-11.581, 0's: 0 Z-trim(107.6): 7  B-trim: 0 in 0/51
 Lambda= 0.168527
 statistics sampled from 9704 (9707) to 9704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.298), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS10535.1 TMEM186 gene_id:25880|Hs108|chr16      ( 213) 1459 362.6  1e-100


>>CCDS10535.1 TMEM186 gene_id:25880|Hs108|chr16           (213 aa)
 initn: 1459 init1: 1459 opt: 1459  Z-score: 1921.6  bits: 362.6 E(32554): 1e-100
Smith-Waterman score: 1459; 99.5% identity (99.5% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE0 MAALLRAVRRFRGKAVWEGPLHGLWCCSGQEDPKRWVGSSSPISKEKLPNAETEKFWMFY
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS10 MAALLRAVRRFRGKAVWERPLHGLWCCSGQEDPKRWVGSSSPISKEKLPNAETEKFWMFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTMLCWM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTMLCWM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVRIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVRIQR
              130       140       150       160       170       180

              190       200       210   
pF1KE0 YSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK
       :::::::::::::::::::::::::::::::::
CCDS10 YSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:14:41 2016 done: Thu Nov  3 12:14:41 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]