FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0338, 505 aa
  1>>>pF1KE0338 505 - 505 aa - 505 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4335+/-0.000422; mu= 17.2035+/- 0.026
 mean_var=67.1320+/-13.632, 0's: 0 Z-trim(110.7): 17  B-trim: 0 in 0/50
 Lambda= 0.156534
 statistics sampled from 19105 (19113) to 19105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.224), width:  16
 Scan time:  9.150

The best scores are:                                      opt bits E(85289)
NP_055121 (OMIM: 613901) tRNA-splicing ligase RtcB ( 505) 3381 773.0       0


>>NP_055121 (OMIM: 613901) tRNA-splicing ligase RtcB hom  (505 aa)
 initn: 3381 init1: 3381 opt: 3381  Z-score: 4125.9  bits: 773.0 E(85289):    0
Smith-Waterman score: 3381; 100.0% identity (100.0% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KE0 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
              430       440       450       460       470       480

              490       500     
pF1KE0 VVNTCHDAGISKKAIKLRPIAVIKG
       :::::::::::::::::::::::::
NP_055 VVNTCHDAGISKKAIKLRPIAVIKG
              490       500     




505 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:18:02 2016 done: Thu Nov  3 15:18:03 2016
 Total Scan time:  9.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]