FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0336, 488 aa
  1>>>pF1KE0336 488 - 488 aa - 488 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5325+/-0.000999; mu= 16.0706+/- 0.059
 mean_var=59.0425+/-12.164, 0's: 0 Z-trim(103.0): 35  B-trim: 468 in 1/45
 Lambda= 0.166914
 statistics sampled from 7185 (7192) to 7185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.221), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS14081.1 ALG12 gene_id:79087|Hs108|chr22        ( 488) 3254 792.3       0
CCDS61641.1 PIGB gene_id:9488|Hs108|chr15          ( 554)  295 79.8 8.3e-15


>>CCDS14081.1 ALG12 gene_id:79087|Hs108|chr22             (488 aa)
 initn: 3254 init1: 3254 opt: 3254  Z-score: 4231.1  bits: 792.3 E(32554):    0
Smith-Waterman score: 3254; 100.0% identity (100.0% similar) in 488 aa overlap (1-488:1-488)

               10        20        30        40        50        60
pF1KE0 MAGKGSSGRRPLLLGLLVAVATVHLVICPYTKVEESFNLQATHDLLYHWQDLEQYDHLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGKGSSGRRPLLLGLLVAVATVHLVICPYTKVEESFNLQATHDLLYHWQDLEQYDHLEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PGVVPRTFLGPVVIAVFSSPAVYVLSLLEMSKFYSQLIVRGVLGLGVIFGLWTLQKEVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGVVPRTFLGPVVIAVFSSPAVYVLSLLEMSKFYSQLIVRGVLGLGVIFGLWTLQKEVRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HFGAMVATMFCWVTAMQFHLMFYCTRTLPNVLALPVVLLALAAWLRHEWARFIWLSAFAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HFGAMVATMFCWVTAMQFHLMFYCTRTLPNVLALPVVLLALAAWLRHEWARFIWLSAFAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IVFRVELCLFLGLLLLLALGNRKVSVVRALRHAVPAGILCLGLTVAVDSYFWRQLTWPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IVFRVELCLFLGLLLLLALGNRKVSVVRALRHAVPAGILCLGLTVAVDSYFWRQLTWPEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KVLWYNTVLNKSSNWGTSPLLWYFYSALPRGLGCSLLFIPLGLVDRRTHAPTVLALGFMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KVLWYNTVLNKSSNWGTSPLLWYFYSALPRGLGCSLLFIPLGLVDRRTHAPTVLALGFMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LYSLLPHKELRFIIYAFPMLNITAARGCSYLLNNYKKSWLYKAGSLLVIGHLVVNAAYSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LYSLLPHKELRFIIYAFPMLNITAARGCSYLLNNYKKSWLYKAGSLLVIGHLVVNAAYSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 TALYVSHFNYPGGVAMQRLHQLVPPQTDVLLHIDVAAAQTGVSRFLQVNSAWRYDKREDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TALYVSHFNYPGGVAMQRLHQLVPPQTDVLLHIDVAAAQTGVSRFLQVNSAWRYDKREDV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 QPGTGMLAYTHILMEAAPGLLALYRDTHRVLASVVGTTGVSLNLTQLPPFNVHLQTKLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QPGTGMLAYTHILMEAAPGLLALYRDTHRVLASVVGTTGVSLNLTQLPPFNVHLQTKLVL
              430       440       450       460       470       480

               
pF1KE0 LERLPRPS
       ::::::::
CCDS14 LERLPRPS
               

>>CCDS61641.1 PIGB gene_id:9488|Hs108|chr15               (554 aa)
 initn: 179 init1:  75 opt: 295  Z-score: 379.3  bits: 79.8 E(32554): 8.3e-15
Smith-Waterman score: 310; 26.2% identity (56.3% similar) in 378 aa overlap (6-359:49-403)

                                        10        20        30     
pF1KE0                          MAGKGSSGRRPLLLGLLVAVATVHLVICPYT-KVE
                                     :. ::  :::      ...:..   . .. 
CCDS61 LTLHGLQNRSHGKIKLRKRKSTLYFNTQEKSARRRGDLLG-----ENIYLLLFTIALRIL
       20        30        40        50             60        70   

           40        50        60                70        80      
pF1KE0 ESFNLQATHDLLYHWQDLEQYDHLEFP-GVVP-------RTFLGPVVIAVFSSPAVY-VL
       . : .:..     .::.::   :. :  : .        :..  :...:     ..: .:
CCDS61 NCFLVQTSFVPDEYWQSLEVSHHMVFNYGYLTWEWTERLRSYTYPLIFA-----SIYKIL
            80        90       100       110       120             

          90             100       110       120       130         
pF1KE0 SLLEMSKFYSQLIV------RGVLGLGVIFGLWTLQKEVRRHFGAMVATMFCWVTAMQFH
        ::  .:   ::..      ...:.  .   :..:.:... .  :  . .:: . .  . 
CCDS61 HLL--GKDSVQLLIWIPRLAQALLSAVADVRLYSLMKQLENQEVARWV-FFCQLCS--WF
      130         140       150       160       170        180     

     140       150       160            170       180       190    
pF1KE0 LMFYCTRTLPNVLALPVVLLALAAW-----LRHEWARFIWLSAFAIIVFRVELCLFLGLL
         . ::::: :..   ....::  .        . ...  : :.:.:.  . . :.  ::
CCDS61 TWYCCTRTLTNTMETVLTIIALFYYPLEGSKSMNSVKYSSLVALAFIIRPTAVILWTPLL
           190       200       210       220       230       240   

           200       210       220       230       240       250   
pF1KE0 LL-LALGNRKVSVVRALRHAVPAGILCLGLTVAVDSYFWRQLTWPEGKVLWYNTVLNKSS
       .  .    ::....  :.: .:.:.. :.:.. .:  :. : :  . . : .:.. : ..
CCDS61 FRHFCQEPRKLDLI--LHHFLPVGFVTLSLSLMIDRIFFGQWTLVQFNFLKFNVLQNWGT
           250         260       270       280       290       300 

           260       270       280         290       300       310 
pF1KE0 NWGTSPLLWYFYSALPRGLGCSLLFIPLG--LVDRRTHAPTVLALGFMALYSLLPHKELR
        .:. :  ::: ...:  ::  : :.  :  :. .: .   : .:  . .::.: :::.:
CCDS61 FYGSHPWHWYFSQGFPVILGTHLPFFIHGCYLAPKRYRILLVTVLWTLLVYSMLSHKEFR
             310       320       330       340       350       360 

             320       330       340       350       360       370 
pF1KE0 FIIYAFPMLNITAARGCSYLLNNYKKSWLYKAGSLLVIGHLVVNAAYSATALYVSHFNYP
       ::  ..:.  .     :.: :.. : .:   : :.: ...: . : :.            
CCDS61 FIYPVLPFCMVF----CGYSLTHLK-TWKKPALSFLFLSNLFL-ALYTGLVHQRGTLDVM
             370           380        390        400       410     

             380       390       400       410       420       430 
pF1KE0 GGVAMQRLHQLVPPQTDVLLHIDVAAAQTGVSRFLQVNSAWRYDKREDVQPGTGMLAYTH
                                                                   
CCDS61 SHIQKVCYNNPNKSSASIFIMMPCHSTPYYSHVHCPLPMRFLQCPPDLTGKSHYLDEADV
         420       430       440       450       460       470     




488 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:22:53 2016 done: Thu Nov  3 15:22:54 2016
 Total Scan time:  2.400 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]