FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0311, 1265 aa
  1>>>pF1KE0311 1265 - 1265 aa - 1265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2233+/-0.00144; mu= 8.9766+/- 0.086
 mean_var=131.3718+/-26.293, 0's: 0 Z-trim(102.3): 58  B-trim: 26 in 1/50
 Lambda= 0.111898
 statistics sampled from 6869 (6893) to 6869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.534), E-opt: 0.2 (0.212), width:  16
 Scan time:  4.940

The best scores are:                                      opt bits E(32554)
CCDS42796.1 SGO2 gene_id:151246|Hs108|chr2         (1265) 8145 1327.6       0


>>CCDS42796.1 SGO2 gene_id:151246|Hs108|chr2              (1265 aa)
 initn: 8145 init1: 8145 opt: 8145  Z-score: 7109.3  bits: 1327.6 E(32554):    0
Smith-Waterman score: 8145; 99.7% identity (99.9% similar) in 1265 aa overlap (1-1265:1-1265)

               10        20        30        40        50        60
pF1KE0 MECPVMETGSLFTSGIKRHLKDKRISKTTKLNVSLASKIKTKILNNSSIFKISLKHNNRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MECPVMETGSLFTSGIKRHLKDKRISKTTKLNVSLASKIKTKILNNSSIFKISLKHNNRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIDIEALMNNNLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LAQALSREKENSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIDIEALMNNNLIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ATEMSSLSEFHQSSFLLSASKKKRVSKQCKLMRLPFARVPLTSNDDEDEDKEKMQCDNNI
       : ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS42 AIEMSSLSEFHQSSFLLSASKKKRISKQCKLMRLPFARVPLTSNDDEDEDKEKMQCDNNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KSKTLPDIPSSGSTTQPLSTQDNSEVLFLKENNQNVYGLDDSEHISSIVDVPPRESHSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSKTLPDIPSSGSTTQPLSTQDNSEVLFLKENNQNVYGLDDSEHISSIVDVPPRESHSHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DQSSKTSLMSEMRNAQSIGRRWEKPSPSNVTERKKRGSSWESNNLSADTPCATVLDKQHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DQSSKTSLMSEMRNAQSIGRRWEKPSPSNVTERKKRGSSWESNNLSADTPCATVLDKQHI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SSPELNCNNEINAHTNETNTEMQRNKQDLPGLSSESAREPNAECMNQIEDNDDFQLQKTV
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSPELNCNNEINGHTNETNTEMQRNKQDLPGLSSESAREPNAECMNQIEDNDDFQLQKTV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 YDADMDLTASEVSKIVAVSTGIKKKSNKKTNEHGMKTFRKVKDSSSEKKRERSKRQFKNS
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS42 YDADMDLTASEVSKIVTVSTGIKKKSNKKTNEHGMKTFRKVKDSSSEKKRERSKRQFKNS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 SDVDIGEKIENRTERSDVLDGKRGAEDPGFIFNNEQLAQMNEQLAQVNELKKMTLQTGFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SDVDIGEKIENRTERSDVLDGKRGAEDPGFIFNNEQLAQMNEQLAQVNELKKMTLQTGFE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 QGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESKFDKGQNSLTCNKSKASRQTFVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESKFDKGQNSLTCNKSKASRQTFVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 HKLEKDNLLPNQKDKVTIYENLDVTNEFHTANLSTKDNGNLCDYGTHNILDLKKYVTDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HKLEKDNLLPNQKDKVTIYENLDVTNEFHTANLSTKDNGNLCDYGTHNILDLKKYVTDIQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 PSEQNESNINKLRKKVNRKTEIISGMNHMYEDNDKDVVHGLKKGNFFFKTQEDKEPISEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSEQNESNINKLRKKVNRKTEIISGMNHMYEDNDKDVVHGLKKGNFFFKTQEDKEPISEN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 IEVSKELQIPALSTRDNENQCDYRTQNVLGLQKQITNMYPVQQNESKVNKKLRQKVNRKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IEVSKELQIPALSTRDNENQCDYRTQNVLGLQKQITNMYPVQQNESKVNKKLRQKVNRKT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 EIISEVNHLDNDKSIEYTVKSHSLFLTQKDKEIIPGNLEDPSEFETPALSTKDSGNLYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EIISEVNHLDNDKSIEYTVKSHSLFLTQKDKEIIPGNLEDPSEFETPALSTKDSGNLYDS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 EIQNVLGVKHGHDMQPACQNDSKIGKKPRLNVCQKSEIIPETNQIYENDNKGVHDLEKDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EIQNVLGVKHGHDMQPACQNDSKIGKKPRLNVCQKSEIIPETNQIYENDNKGVHDLEKDN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 FFSLTPKDKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FFSLTPKDKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE0 SKINKLRNKVNWKTEIISEMNQIYEDNDKDAHVQESYTKDLDFKVNKSKQKLECQDIINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKINKLRNKVNWKTEIISEMNQIYEDNDKDAHVQESYTKDLDFKVNKSKQKLECQDIINK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE0 HYMEVNSNEKESCDQILDSYKVVKKRKKESSCKAKNILTKAKNKLASQLTESSQTSISLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HYMEVNSNEKESCDQILDSYKVVKKRKKESSCKAKNILTKAKNKLASQLTESSQTSISLE
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE0 SDLKHITSEADSDPGNPVELCKTQKQSTTTLNKKDLPFVEEIKEGECQVKKVNKMTSKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SDLKHITSEADSDPGNPVELCKTQKQSTTTLNKKDLPFVEEIKEGECQVKKVNKMTSKSK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE0 KRKTSIDPSPESHEVMERILDSVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KRKTSIDPSPESHEVMERILDSVQGKSTVSEQADKENNLENEKMVKNKPDFYTKAFRSLS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE0 EIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFK
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE0 VNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLR
             1210      1220      1230      1240      1250      1260

            
pF1KE0 DKMRR
       :::::
CCDS42 DKMRR
            




1265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:18:03 2016 done: Thu Nov  3 16:18:04 2016
 Total Scan time:  4.940 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]