Result of FASTA (omim) for
pF1KE0291
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0291, 407 aa
1>>>pF1KE0291 407 - 407 aa - 407 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5990+/-0.000326; mu= 13.4216+/- 0.021
mean_var=148.9210+/-29.277, 0's: 0 Z-trim(120.2): 33 B-trim: 56 in 2/57
Lambda= 0.105098
statistics sampled from 35204 (35251) to 35204 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.413), width: 16
Scan time: 8.610
The best scores are: opt bits E(85289)
NP_001073913 (OMIM: 610638) immunoglobulin superfa ( 407) 2833 441.0 2.6e-123
XP_011527774 (OMIM: 610638) PREDICTED: immunoglobu ( 497) 2603 406.2 9.3e-113
XP_016883769 (OMIM: 610638) PREDICTED: immunoglobu ( 502) 2400 375.4 1.7e-103
XP_011527775 (OMIM: 610638) PREDICTED: immunoglobu ( 488) 1976 311.1 3.8e-84
XP_016883768 (OMIM: 610638) PREDICTED: immunoglobu ( 519) 1976 311.1 4e-84
>>NP_001073913 (OMIM: 610638) immunoglobulin superfamily (407 aa)
initn: 2833 init1: 2833 opt: 2833 Z-score: 2334.9 bits: 441.0 E(85289): 2.6e-123
Smith-Waterman score: 2833; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE0 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSQGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRCSLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVSHSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCE
310 320 330 340 350 360
370 380 390 400
pF1KE0 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
370 380 390 400
>>XP_011527774 (OMIM: 610638) PREDICTED: immunoglobulin (497 aa)
initn: 2603 init1: 2603 opt: 2603 Z-score: 2145.3 bits: 406.2 E(85289): 9.3e-113
Smith-Waterman score: 2603; 100.0% identity (100.0% similar) in 374 aa overlap (34-407:124-497)
10 20 30 40 50 60
pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS
::::::::::::::::::::::::::::::
XP_011 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS
100 110 120 130 140 150
70 80 90 100 110 120
pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
160 170 180 190 200 210
130 140 150 160 170 180
pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
220 230 240 250 260 270
190 200 210 220 230 240
pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
280 290 300 310 320 330
250 260 270 280 290 300
pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
340 350 360 370 380 390
310 320 330 340 350 360
pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
400 410 420 430 440 450
370 380 390 400
pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
460 470 480 490
>>XP_016883769 (OMIM: 610638) PREDICTED: immunoglobulin (502 aa)
initn: 2484 init1: 2400 opt: 2400 Z-score: 1978.9 bits: 375.4 E(85289): 1.7e-103
Smith-Waterman score: 2400; 99.4% identity (100.0% similar) in 345 aa overlap (34-378:124-468)
10 20 30 40 50 60
pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS
::::::::::::::::::::::::::::::
XP_016 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS
100 110 120 130 140 150
70 80 90 100 110 120
pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
160 170 180 190 200 210
130 140 150 160 170 180
pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
220 230 240 250 260 270
190 200 210 220 230 240
pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
280 290 300 310 320 330
250 260 270 280 290 300
pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
340 350 360 370 380 390
310 320 330 340 350 360
pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
400 410 420 430 440 450
370 380 390 400
pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
:::::::::::::..
XP_016 PEQRNSSCGPPHQKSSYNCAFRITCTSCPCSTGLAAKHREEFEMLTVVP
460 470 480 490 500
>>XP_011527775 (OMIM: 610638) PREDICTED: immunoglobulin (488 aa)
initn: 1963 init1: 1963 opt: 1976 Z-score: 1631.6 bits: 311.1 E(85289): 3.8e-84
Smith-Waterman score: 1976; 88.8% identity (93.8% similar) in 322 aa overlap (34-355:124-439)
10 20 30 40 50 60
pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS
::::::::::::::::::::::::::::::
XP_011 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS
100 110 120 130 140 150
70 80 90 100 110 120
pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
160 170 180 190 200 210
130 140 150 160 170 180
pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
220 230 240 250 260 270
190 200 210 220 230 240
pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
280 290 300 310 320 330
250 260 270 280 290 300
pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
340 350 360 370 380 390
310 320 330 340 350 360
pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
::::::::: ...:. . .: ...: .. . . ... : :::
XP_011 CFCCRRKRG---NLKKRRQTKKLRQKVEMKTP---ATIQMNKRPQTPLLSLPNPVNPVIL
400 410 420 430 440
370 380 390 400
pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
XP_011 NKETVAVALLTSGLINVHPGQQVIHRLLLIWPVLRRSVIQL
450 460 470 480
>>XP_016883768 (OMIM: 610638) PREDICTED: immunoglobulin (519 aa)
initn: 1963 init1: 1963 opt: 1976 Z-score: 1631.3 bits: 311.1 E(85289): 4e-84
Smith-Waterman score: 1976; 88.8% identity (93.8% similar) in 322 aa overlap (34-355:124-439)
10 20 30 40 50 60
pF1KE0 KERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVS
::::::::::::::::::::::::::::::
XP_016 RFYFLHQDSSHATNGESSQLLELIFLEKNAGSGSGNEVIEGPQNARVLKGSQARFNCTVS
100 110 120 130 140 150
70 80 90 100 110 120
pF1KE0 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGWKLIMWALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRC
160 170 180 190 200 210
130 140 150 160 170 180
pF1KE0 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLQNSRLHGSAYLTVQVMGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVS
220 230 240 250 260 270
190 200 210 220 230 240
pF1KE0 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSYYFVPEPSDLQSAVSILALTPQSNGTLTCVATWKSLKARKSATVNLTVIRCPQDTGG
280 290 300 310 320 330
250 260 270 280 290 300
pF1KE0 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPTCTLTIRCCCCRRRCCGCNCCCRC
340 350 360 370 380 390
310 320 330 340 350 360
pF1KE0 CFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTDTASLPPKSCESSD
::::::::: ...:. . .: ...: .. . . ... : :::
XP_016 CFCCRRKRG---NLKKRRQTKKLRQKVEMKTP---ATIQMNKRPQTPLLSLPNPVNPVIL
400 410 420 430 440
370 380 390 400
pF1KE0 PEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV
XP_016 NKETVAVALLTRSLPTTVHLELLVPRVPAPPALLQSTEKSLRCSRWCHDECQVKGLDTKD
450 460 470 480 490 500
407 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:31:27 2016 done: Thu Nov 3 17:31:29 2016
Total Scan time: 8.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]