FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0287, 455 aa
  1>>>pF1KE0287 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6733+/-0.0013; mu= 15.6367+/- 0.077
 mean_var=68.1845+/-14.207, 0's: 0 Z-trim(99.2): 37  B-trim: 0 in 0/47
 Lambda= 0.155321
 statistics sampled from 5649 (5656) to 5649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.501), E-opt: 0.2 (0.174), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS72857.1 GPR89A gene_id:653519|Hs108|chr1       ( 455) 2957 672.3 2.7e-193
CCDS930.1 GPR89B gene_id:51463|Hs108|chr1          ( 455) 2957 672.3 2.7e-193
CCDS72858.1 GPR89A gene_id:653519|Hs108|chr1       ( 430) 2789 634.7 5.6e-182


>>CCDS72857.1 GPR89A gene_id:653519|Hs108|chr1            (455 aa)
 initn: 2957 init1: 2957 opt: 2957  Z-score: 3583.7  bits: 672.3 E(32554): 2.7e-193
Smith-Waterman score: 2957; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KE0 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
              370       380       390       400       410       420

              430       440       450     
pF1KE0 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
       :::::::::::::::::::::::::::::::::::
CCDS72 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
              430       440       450     

>>CCDS930.1 GPR89B gene_id:51463|Hs108|chr1               (455 aa)
 initn: 2957 init1: 2957 opt: 2957  Z-score: 3583.7  bits: 672.3 E(32554): 2.7e-193
Smith-Waterman score: 2957; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KE0 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
              370       380       390       400       410       420

              430       440       450     
pF1KE0 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
       :::::::::::::::::::::::::::::::::::
CCDS93 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
              430       440       450     

>>CCDS72858.1 GPR89A gene_id:653519|Hs108|chr1            (430 aa)
 initn: 2789 init1: 2789 opt: 2789  Z-score: 3380.6  bits: 634.7 E(32554): 5.6e-182
Smith-Waterman score: 2789; 100.0% identity (100.0% similar) in 430 aa overlap (26-455:1-430)

               10        20        30        40        50        60
pF1KE0 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
                                :::::::::::::::::::::::::::::::::::
CCDS72                          MRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIF
                                        10        20        30     

               70        80        90       100       110       120
pF1KE0 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTF
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KE0 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRN
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KE0 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASG
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KE0 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWK
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KE0 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLL
         280       290       300       310       320       330     

              370       380       390       400       410       420
pF1KE0 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFN
         340       350       360       370       380       390     

              430       440       450     
pF1KE0 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
       :::::::::::::::::::::::::::::::::::
CCDS72 FYHRWFDVIFLVSALSSILFLYLAHKQAPEKQMAP
         400       410       420       430




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:38:06 2016 done: Thu Nov  3 17:38:06 2016
 Total Scan time:  2.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]