Result of FASTA (ccds) for
pF1KE0285
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0285, 221 aa
1>>>pF1KE0285 221 - 221 aa - 221 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4475+/-0.000745; mu= 13.6447+/- 0.045
mean_var=76.8208+/-14.887, 0's: 0 Z-trim(109.9): 19 B-trim: 8 in 1/49
Lambda= 0.146330
statistics sampled from 11231 (11250) to 11231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.346), width: 16
Scan time: 1.420
The best scores are: opt bits E(32554)
CCDS73858.1 NPIPB9 gene_id:100507607|Hs108|chr16 ( 429) 903 199.7 2.4e-51
CCDS81963.1 NPIPB8 gene_id:728734|Hs108|chr16 ( 432) 903 199.7 2.4e-51
CCDS61892.1 NPIPB6 gene_id:728741|Hs108|chr16 ( 425) 901 199.3 3.2e-51
CCDS76897.1 NPIPB15 gene_id:440348|Hs108|chr16 ( 443) 892 197.4 1.2e-50
CCDS45443.1 NPIPB5 gene_id:100132247|Hs108|chr16 (1133) 854 189.6 6.8e-48
CCDS81968.1 NPIPB13 gene_id:613037|Hs108|chr16 (1138) 854 189.6 6.8e-48
>>CCDS73858.1 NPIPB9 gene_id:100507607|Hs108|chr16 (429 aa)
initn: 898 init1: 898 opt: 903 Z-score: 1035.3 bits: 199.7 E(32554): 2.4e-51
Smith-Waterman score: 903; 82.8% identity (89.3% similar) in 169 aa overlap (23-191:99-261)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::::::::::::::::::::::::::::::
CCDS73 PQKLDNLIIIIIGFLRRYTFNILFCTSCLCVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
130 140 150 160 170 180
120 130 140 150 160 170
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEHSLPGQDMD
:::::::::::::::::::::::::::::::::::::::::: . : :: ..
CCDS73 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM---AAAEHR---HSSG
190 200 210 220 230 240
180 190 200 210 220
pF1KE0 TFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
. : : :..:. .:...
CCDS73 LPYWLYLTAETLKNRMGRQPPPPTQQHSITDNSLSLKTPPECLLTPLPPSVDDNIKECPL
250 260 270 280 290 300
>>CCDS81963.1 NPIPB8 gene_id:728734|Hs108|chr16 (432 aa)
initn: 898 init1: 898 opt: 903 Z-score: 1035.3 bits: 199.7 E(32554): 2.4e-51
Smith-Waterman score: 903; 82.8% identity (89.3% similar) in 169 aa overlap (23-191:102-264)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::::::::::::::::::::::::::::::
CCDS81 PQKLDNLIIIIIGFLRCYTFNILFCTSCLCVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
80 90 100 110 120 130
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
140 150 160 170 180 190
120 130 140 150 160 170
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEHSLPGQDMD
:::::::::::::::::::::::::::::::::::::::::: . : :: ..
CCDS81 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM---AAAEHR---HSSG
200 210 220 230 240
180 190 200 210 220
pF1KE0 TFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
. : : :..:. .:...
CCDS81 LPYWLYLTAETLKNRMGRQPPPPTQQHSITDNSLSLKTPPECLLTPLPPSVDDNIKECPL
250 260 270 280 290 300
>>CCDS61892.1 NPIPB6 gene_id:728741|Hs108|chr16 (425 aa)
initn: 898 init1: 898 opt: 901 Z-score: 1033.1 bits: 199.3 E(32554): 3.2e-51
Smith-Waterman score: 901; 95.1% identity (96.5% similar) in 142 aa overlap (23-164:102-240)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::::::::::::::::::::::::::::::
CCDS61 PQKLDNLIIIIIGFLRRYTFNILFCTSCLCVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
80 90 100 110 120 130
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
140 150 160 170 180 190
120 130 140 150 160 170
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEHSLPGQDMD
:::::::::::::::::::::::::::::::::::::::::: . .: ::
CCDS61 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM---VAAEHRHSSGLPY
200 210 220 230 240
180 190 200 210 220
pF1KE0 TFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
CCDS61 WPYLTAETLKNRMGRQPPPPTQQHSITDNSLSLKTPTECLLTPLPPSVDDNIKECPLAPL
250 260 270 280 290 300
>>CCDS76897.1 NPIPB15 gene_id:440348|Hs108|chr16 (443 aa)
initn: 1043 init1: 890 opt: 892 Z-score: 1022.6 bits: 197.4 E(32554): 1.2e-50
Smith-Waterman score: 892; 72.9% identity (79.3% similar) in 203 aa overlap (23-216:84-275)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::::::::::::::::: ::::::::::::
CCDS76 PQKLDNLIIIIIGFLRRDTFTILFCTSYLCVSFLKTIFWSRNGHDGSTDVQQRAWRSNRS
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
120 130 140 150 160 170
120 130 140 150 160
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEH----SLPG
:::::::::::::::::::::::::::::::::::::::::: . : :: .::
CCDS76 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM---AAAEHRHSSGLPC
180 190 200 210 220 230
170 180 190 200 210 220
pF1KE0 QDMDTFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKH-----LHPHPVGPLI
. : :.::. .:... .. : . : . : ::: :
CCDS76 WPY-------LTAEALKNRMGRQPPPPTQQHSI-TDNSLSLKTPPECLLHPLPPSVDDNI
240 250 260 270 280
CCDS76 KECPLAPLPPSVDDNLKEYLLVPLPPSPLPPSVDDNLKDCLFVPLPPSPLPPSVDDNLKT
290 300 310 320 330 340
>>CCDS45443.1 NPIPB5 gene_id:100132247|Hs108|chr16 (1133 aa)
initn: 854 init1: 854 opt: 854 Z-score: 973.4 bits: 189.6 E(32554): 6.8e-48
Smith-Waterman score: 854; 94.0% identity (97.0% similar) in 134 aa overlap (23-156:84-217)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::.:::::::::::::: :::::::::::
CCDS45 DFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRR
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::.:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS45 RQEGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKIN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEHSLPGQDMD
:::::::::::::::::::::::::::::::::::: ::::: .
CCDS45 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPY
180 190 200 210 220 230
180 190 200 210 220
pF1KE0 TFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
CCDS45 LTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECLLTPLPPSADDNLKTPPECVLTPL
240 250 260 270 280 290
>>CCDS81968.1 NPIPB13 gene_id:613037|Hs108|chr16 (1138 aa)
initn: 854 init1: 854 opt: 854 Z-score: 973.3 bits: 189.6 E(32554): 6.8e-48
Smith-Waterman score: 854; 94.0% identity (97.0% similar) in 134 aa overlap (23-156:84-217)
10 20 30 40 50
pF1KE0 MRLRFWLLIWLLLGFISHQPTPVSFLKTIFWSRNGHDGSMDVQQRAWRSNRS
::.:::::::::::::: :::::::::::
CCDS81 DFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRR
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE0 RQKGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKIN
::.:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS81 RQEGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKIN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVSLFVFLAFEHSLPGQDMD
:::::::::::::::::::::::::::::::::::: ::::: .
CCDS81 GKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPY
180 190 200 210 220 230
180 190 200 210 220
pF1KE0 TFFSLQLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI
CCDS81 LTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECVLTPLPPSADDNLKTPPECVLTPL
240 250 260 270 280 290
221 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:00:49 2016 done: Sat Nov 5 12:00:49 2016
Total Scan time: 1.420 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]