FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0272, 209 aa
  1>>>pF1KE0272 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6311+/-0.000657; mu= 5.4213+/- 0.040
 mean_var=177.2460+/-35.580, 0's: 0 Z-trim(118.3): 5  B-trim: 421 in 1/53
 Lambda= 0.096335
 statistics sampled from 19195 (19200) to 19195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.59), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS35.1 TMEM52 gene_id:339456|Hs108|chr1          ( 209) 1475 215.6 1.8e-56


>>CCDS35.1 TMEM52 gene_id:339456|Hs108|chr1               (209 aa)
 initn: 1475 init1: 1475 opt: 1475  Z-score: 1127.3  bits: 215.6 E(32554): 1.8e-56
Smith-Waterman score: 1475; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE0 MARGPLAARGLRLLLPLLPLLPLLPLPQVALGFADGSCDPSDQCPPQARWSSLWHVGLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MARGPLAARGLRLLLPLLPLLPLLPLPQVALGFADGSCDPSDQCPPQARWSSLWHVGLIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAVLLLLLCGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LAVLLLLLCGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSPVHSTVTSYSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VQYPLGMRLPLPFGELDLDSMAPPAYSLYTPEPPPSYDEAVKMAKPREEGPALSQKPSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VQYPLGMRLPLPFGELDLDSMAPPAYSLYTPEPPPSYDEAVKMAKPREEGPALSQKPSPL
              130       140       150       160       170       180

              190       200         
pF1KE0 LGASGLETTPVPQESGPNTQLPPCSPGAP
       :::::::::::::::::::::::::::::
CCDS35 LGASGLETTPVPQESGPNTQLPPCSPGAP
              190       200         




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:10:45 2016 done: Thu Nov  3 18:10:45 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]