FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0262, 151 aa
  1>>>pF1KE0262 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6098+/-0.000731; mu= 10.1480+/- 0.044
 mean_var=64.7634+/-12.705, 0's: 0 Z-trim(109.3): 6  B-trim: 0 in 0/52
 Lambda= 0.159371
 statistics sampled from 10773 (10777) to 10773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS1357.1 ARPC5 gene_id:10092|Hs108|chr1          ( 151)  965 230.0 4.4e-61
CCDS58050.1 ARPC5 gene_id:10092|Hs108|chr1         ( 154)  943 224.9 1.5e-59
CCDS6859.1 ARPC5L gene_id:81873|Hs108|chr9         ( 153)  691 167.0 4.1e-42


>>CCDS1357.1 ARPC5 gene_id:10092|Hs108|chr1               (151 aa)
 initn: 965 init1: 965 opt: 965  Z-score: 1210.2  bits: 230.0 E(32554): 4.4e-61
Smith-Waterman score: 965; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
               70        80        90       100       110       120

              130       140       150 
pF1KE0 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
       :::::::::::::::::::::::::::::::
CCDS13 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
              130       140       150 

>>CCDS58050.1 ARPC5 gene_id:10092|Hs108|chr1              (154 aa)
 initn: 945 init1: 639 opt: 943  Z-score: 1182.7  bits: 224.9 E(32554): 1.5e-59
Smith-Waterman score: 943; 97.4% identity (98.1% similar) in 154 aa overlap (1-151:1-154)

               10        20        30        40           50       
pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ---GNMTAALQA
       :::::::::::::::::::::::::::::::::::::::::::::::.   :::::::::
CCDS58 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRHSITGNMTAALQA
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE0 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
               70        80        90       100       110       120

       120       130       140       150 
pF1KE0 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV
       ::::::::::::::::::::::::::::::::::
CCDS58 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV
              130       140       150    

>>CCDS6859.1 ARPC5L gene_id:81873|Hs108|chr9              (153 aa)
 initn: 592 init1: 572 opt: 691  Z-score: 869.6  bits: 167.0 E(32554): 4.1e-42
Smith-Waterman score: 691; 68.8% identity (90.9% similar) in 154 aa overlap (1-151:1-153)

               10        20        30           40        50       
pF1KE0 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA
       :..::.:: :::.::.::.::::::::.. . . :   ::: .:::. ::::.:  :..:
CCDS68 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA
                10        20        30        40        50         

        60        70        80        90       100       110       
pF1KE0 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
       ::.: :.:::.::::.:: ..::::: .::...::.::::::.:::::::::::::::.:
CCDS68 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKP
      60        70        80        90       100       110         

       120       130       140       150 
pF1KE0 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV
       ..::::.::::::::::.::.:::.:::::::::
CCDS68 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV
     120       130       140       150   




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:36:40 2016 done: Thu Nov  3 18:36:40 2016
 Total Scan time:  1.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]