FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0251, 89 aa
  1>>>pF1KE0251 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5056+/-0.00056; mu= 7.5984+/- 0.034
 mean_var=160.8309+/-31.205, 0's: 0 Z-trim(120.8): 36  B-trim: 54 in 1/52
 Lambda= 0.101132
 statistics sampled from 22468 (22508) to 22468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.92), E-opt: 0.2 (0.691), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS1017.1 LCE3A gene_id:353142|Hs108|chr1         (  89)  703 111.5 6.9e-26
CCDS1014.1 LCE3D gene_id:84648|Hs108|chr1          (  92)  546 88.6 5.6e-19
CCDS1015.1 LCE3C gene_id:353144|Hs108|chr1         (  94)  546 88.6 5.7e-19
CCDS1016.1 LCE3B gene_id:353143|Hs108|chr1         (  95)  536 87.2 1.6e-18
CCDS1013.1 LCE3E gene_id:353145|Hs108|chr1         (  92)  532 86.6 2.3e-18


>>CCDS1017.1 LCE3A gene_id:353142|Hs108|chr1              (89 aa)
 initn: 703 init1: 703 opt: 703  Z-score: 578.2  bits: 111.5 E(32554): 6.9e-26
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MSCQQNQQQCQPPPKCPAKSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCRRSHRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQNQQQCQPPPKCPAKSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCRRSHRC
               10        20        30        40        50        60

               70        80         
pF1KE0 RCQSSNSCDRGSGQQGGSSSCGHSSAGCC
       :::::::::::::::::::::::::::::
CCDS10 RCQSSNSCDRGSGQQGGSSSCGHSSAGCC
               70        80         

>>CCDS1014.1 LCE3D gene_id:84648|Hs108|chr1               (92 aa)
 initn: 393 init1: 270 opt: 546  Z-score: 454.2  bits: 88.6 E(32554): 5.6e-19
Smith-Waterman score: 546; 76.6% identity (86.2% similar) in 94 aa overlap (1-89:1-92)

               10             20        30        40        50     
pF1KE0 MSCQQNQQQCQPPPKCPA-----KSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCR
       :::::::::::::::::.     :::.::::::::.::::::::::::: .: :.:::  
CCDS10 MSCQQNQQQCQPPPKCPSPKCPPKSPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR--
               10        20        30        40        50          

          60        70        80         
pF1KE0 RSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC
       : :::: :  ::::::::::::.:.:::.:.:::
CCDS10 RHHRCRRQRPNSCDRGSGQQGGGSGCGHGSGGCC
       60        70        80        90  

>>CCDS1015.1 LCE3C gene_id:353144|Hs108|chr1              (94 aa)
 initn: 468 init1: 468 opt: 546  Z-score: 454.1  bits: 88.6 E(32554): 5.7e-19
Smith-Waterman score: 546; 77.7% identity (84.0% similar) in 94 aa overlap (1-89:1-94)

               10             20        30        40        50     
pF1KE0 MSCQQNQQQCQPPP-----KCPAKSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCR
       ::::::::::::::     ::: ::::::::: ::.:: :::::::::: .:::::::  
CCDS10 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
               10        20        30        40        50        60

          60        70        80         
pF1KE0 RSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC
       :::.:: : :::::::::::::.:  ::.:.:::
CCDS10 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
               70        80        90    

>>CCDS1016.1 LCE3B gene_id:353143|Hs108|chr1              (95 aa)
 initn: 468 init1: 315 opt: 536  Z-score: 446.2  bits: 87.2 E(32554): 1.6e-18
Smith-Waterman score: 536; 76.8% identity (83.2% similar) in 95 aa overlap (1-89:1-95)

               10             20        30        40         50    
pF1KE0 MSCQQNQQQCQP-P----PKCPAKSPAQCLPPASSSCAPSSGGCG-PSSERSCCLSHHRC
       :::::::::::: :    :::: :: ::::::::: :::  : :: :::: .::::::::
CCDS10 MSCQQNQQQCQPLPKCPSPKCPPKSSAQCLPPASSCCAPRPGCCGGPSSEGGCCLSHHRC
               10        20        30        40        50        60

           60        70        80         
pF1KE0 RRSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC
        :::::: ::::::::::::: :.:.::..:.:::
CCDS10 CRSHRCRRQSSNSCDRGSGQQDGASDCGYGSGGCC
               70        80        90     

>>CCDS1013.1 LCE3E gene_id:353145|Hs108|chr1              (92 aa)
 initn: 383 init1: 266 opt: 532  Z-score: 443.2  bits: 86.6 E(32554): 2.3e-18
Smith-Waterman score: 532; 74.5% identity (86.2% similar) in 94 aa overlap (1-89:1-92)

               10             20        30        40        50     
pF1KE0 MSCQQNQQQCQPPPKCPA-----KSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCR
       :::::::.:::::::::.     :.:.::::::::.::::::::::::: .: :.:::  
CCDS10 MSCQQNQKQCQPPPKCPSPKCPPKNPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR--
               10        20        30        40        50          

          60        70        80         
pF1KE0 RSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC
       : :::: : :::::::::::::.:.: :.:.:::
CCDS10 RHHRCRRQRSNSCDRGSGQQGGGSGCCHGSGGCC
       60        70        80        90  




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:09:34 2016 done: Thu Nov  3 19:09:35 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]