FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0245, 240 aa
  1>>>pF1KE0245 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7355+/-0.000658; mu= 17.2725+/- 0.040
 mean_var=60.0661+/-12.386, 0's: 0 Z-trim(109.9): 16  B-trim: 515 in 1/48
 Lambda= 0.165485
 statistics sampled from 11211 (11227) to 11211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.345), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS12171.1 TNFSF14 gene_id:8740|Hs108|chr19       ( 240) 1611 392.5 1.3e-109
CCDS45939.1 TNFSF14 gene_id:8740|Hs108|chr19       ( 204) 1126 276.6 8.4e-75
CCDS1304.1 FASLG gene_id:356|Hs108|chr1            ( 281)  295 78.3 5.7e-15


>>CCDS12171.1 TNFSF14 gene_id:8740|Hs108|chr19            (240 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 2081.2  bits: 392.5 E(32554): 1.3e-109
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KE0 MEESVVRPSVFVVDGQTDIPFTRLGRSHRRQSCSVARVGLGLLLLLMGAGLAVQGWFLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEESVVRPSVFVVDGQTDIPFTRLGRSHRRQSCSVARVGLGLLLLLMGAGLAVQGWFLLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LHWRLGEMVTRLPDGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTGSGGPLLWETQLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LHWRLGEMVTRLPDGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTGSGGPLLWETQLGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VSQQSPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VSQQSPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV
              190       200       210       220       230       240

>>CCDS45939.1 TNFSF14 gene_id:8740|Hs108|chr19            (204 aa)
 initn: 1121 init1: 1121 opt: 1126  Z-score: 1456.4  bits: 276.6 E(32554): 8.4e-75
Smith-Waterman score: 1285; 85.0% identity (85.0% similar) in 240 aa overlap (1-240:1-204)

               10        20        30        40        50        60
pF1KE0 MEESVVRPSVFVVDGQTDIPFTRLGRSHRRQSCSVARVGLGLLLLLMGAGLAVQGWFLLQ
       :::::::::::::::::::::::::::::::::::::                       
CCDS45 MEESVVRPSVFVVDGQTDIPFTRLGRSHRRQSCSVAR-----------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE0 LHWRLGEMVTRLPDGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTGSGGPLLWETQLGL
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 -------------DGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTGSGGPLLWETQLGL
                     40        50        60        70        80    

              130       140       150       160       170       180
pF1KE0 AFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELL
           90       100       110       120       130       140    

              190       200       210       220       230       240
pF1KE0 VSQQSPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSQQSPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV
          150       160       170       180       190       200    

>>CCDS1304.1 FASLG gene_id:356|Hs108|chr1                 (281 aa)
 initn: 196 init1: 146 opt: 295  Z-score: 382.2  bits: 78.3 E(32554): 5.7e-15
Smith-Waterman score: 295; 29.2% identity (62.8% similar) in 226 aa overlap (20-238:70-279)

                          10        20        30        40         
pF1KE0            MEESVVRPSVFVVDGQTDIPFTRLGRSHRRQSCSVARVGLGLLLLLMGA
                                     :. . : .:    : ..   . .:. :.: 
CCDS13 PGQRRPPPPPPPPPLPPPPPPPPLPPLPLPPLKKRG-NHSTGLCLLVMFFM-VLVALVGL
      40        50        60        70         80         90       

      50         60        70         80            90       100   
pF1KE0 GLAVQGWF-LLQLHWRLGEMVTRLPD-GPAGSWEQLIQER----RSHEVNPAAHLTGANS
       ::   : : :..:. .:.:.     .   :.: :. : .     ...:.  .::::: ..
CCDS13 GL---GMFQLFHLQKELAELRESTSQMHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSN
          100       110       120       130       140       150    

           110       120       130       140       150       160   
pF1KE0 SLTGSGGPLLWETQLGLAFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLASTIT
       : .    :: ::   :...: :..:. :.::....: :..:::: . : .:       ..
CCDS13 SRSM---PLEWEDTYGIVLLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCN---NLPLS
             160       170       180       190       200           

           170       180        190       200       210       220  
pF1KE0 HGLYKRTPRYPEELELLVSQQ-SPCGRATSSSRVWWDSSFLGGVVHLEAGEKVVVRVLDE
       : .: :. .::..: .. ... : :    .....:  ::.::.: .: ..... : : . 
CCDS13 HKVYMRNSKYPQDLVMMEGKMMSYC----TTGQMWARSSYLGAVFNLTSADHLYVNVSEL
      210       220       230           240       250       260    

            230       240
pF1KE0 RLVRLRDGTRSYFGAFMV
        :: ... ....:: .  
CCDS13 SLVNFEE-SQTFFGLYKL
          270        280 




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:31:05 2016 done: Thu Nov  3 19:31:05 2016
 Total Scan time:  2.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]