Result of FASTA (ccds) for
pF1KE0228
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0228, 110 aa
1>>>pF1KE0228 110 - 110 aa - 110 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7991+/-0.000664; mu= 12.2421+/- 0.040
mean_var=52.8878+/-10.508, 0's: 0 Z-trim(108.9): 31 B-trim: 0 in 0/51
Lambda= 0.176358
statistics sampled from 10490 (10515) to 10490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.323), width: 16
Scan time: 1.580
The best scores are: opt bits E(32554)
CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11 ( 110) 702 185.8 4.7e-48
CCDS8330.1 CASP1 gene_id:834|Hs108|chr11 ( 404) 543 145.6 2.1e-35
CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11 ( 97) 495 133.1 3e-32
CCDS8329.1 CASP1 gene_id:834|Hs108|chr11 ( 383) 487 131.4 3.9e-31
CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11 ( 197) 464 125.4 1.3e-29
CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11 ( 90) 302 84.0 1.7e-17
>>CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11 (110 aa)
initn: 702 init1: 702 opt: 702 Z-score: 976.3 bits: 185.8 E(32554): 4.7e-48
Smith-Waterman score: 702; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
70 80 90 100 110
>>CCDS8330.1 CASP1 gene_id:834|Hs108|chr11 (404 aa)
initn: 543 init1: 543 opt: 543 Z-score: 749.0 bits: 145.6 E(32554): 2.1e-35
Smith-Waterman score: 543; 80.9% identity (90.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
::::::::::: ::::.::::::::: :::.::::..::.: :: ::::::::.:::.::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
:: ::: ::::::::::::::.::::::::: ::::.:. :::: :: :
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
70 80 90 100 110 120
CCDS83 PAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRT
130 140 150 160 170 180
>>CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11 (97 aa)
initn: 495 init1: 495 opt: 495 Z-score: 692.4 bits: 133.1 E(32554): 3e-32
Smith-Waterman score: 495; 82.5% identity (90.7% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
::::::::::: ::.:.::::::::: :::.::::.:::.: :: ::::::::.:::.::
CCDS41 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
:: ::: ::::::::::::::.:: :::::::: ::
CCDS41 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN
70 80 90
>>CCDS8329.1 CASP1 gene_id:834|Hs108|chr11 (383 aa)
initn: 487 init1: 487 opt: 487 Z-score: 672.4 bits: 131.4 E(32554): 3.9e-31
Smith-Waterman score: 487; 83.9% identity (93.5% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
::::::::::: ::::.::::::::: :::.::::..::.: :: ::::::::.:::.::
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
:: ::: ::::::::::::::.:::::::::.:
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
70 80 90 100 110 120
CCDS83 QRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD
130 140 150 160 170 180
>>CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11 (197 aa)
initn: 464 init1: 464 opt: 464 Z-score: 645.1 bits: 125.4 E(32554): 1.3e-29
Smith-Waterman score: 464; 83.5% identity (92.3% similar) in 91 aa overlap (1-91:1-91)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
::::::::::: ::.:.::::::::: :::.::::.:::.: :: ::::::::.:::.::
CCDS31 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
:: ::: ::::::::::::::.:: ::::::
CCDS31 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
70 80 90 100 110 120
CCDS31 QRIWKQKLQRCHVQNTIIKWSERYTSGSFEMQWLFLRTNFIERFWRNILLLPLHKGSLYP
130 140 150 160 170 180
>>CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11 (90 aa)
initn: 302 init1: 302 opt: 302 Z-score: 427.6 bits: 84.0 E(32554): 1.7e-17
Smith-Waterman score: 302; 55.1% identity (78.7% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE0 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
:::..:..::. ::.::: ::::.:: ::: .:.:::... :. :: :::::::.:.:
CCDS53 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
: :: .: : ..:::: .::. .::
CCDS53 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
70 80 90
110 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:29:12 2016 done: Thu Nov 3 20:29:13 2016
Total Scan time: 1.580 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]