Result of FASTA (omim) for
pF1KE0225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0225, 118 aa
1>>>pF1KE0225 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3359+/-0.000272; mu= -0.0573+/- 0.017
mean_var=238.3043+/-47.422, 0's: 0 Z-trim(127.2): 31 B-trim: 51 in 1/60
Lambda= 0.083082
statistics sampled from 55110 (55151) to 55110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.88), E-opt: 0.2 (0.647), width: 16
Scan time: 5.240
The best scores are: opt bits E(85289)
NP_848525 (OMIM: 612619) late cornified envelope p ( 118) 986 128.7 2.2e-30
NP_848517 (OMIM: 612612) late cornified envelope p ( 110) 650 88.3 2.8e-18
NP_848130 (OMIM: 612607) late cornified envelope p ( 118) 646 87.9 4.1e-18
NP_848128 (OMIM: 612605) late cornified envelope p ( 118) 641 87.3 6.2e-18
NP_848131 (OMIM: 612608) late cornified envelope p ( 118) 640 87.2 6.8e-18
NP_848516 (OMIM: 612611) late cornified envelope p ( 110) 633 86.3 1.2e-17
NP_055172 (OMIM: 612610) late cornified envelope p ( 110) 632 86.2 1.3e-17
NP_848125 (OMIM: 612603) late cornified envelope p ( 110) 628 85.7 1.7e-17
NP_848126 (OMIM: 612604) late cornified envelope p ( 118) 628 85.7 1.8e-17
NP_848515 (OMIM: 612609) late cornified envelope p ( 106) 621 84.9 3.1e-17
NP_848129 (OMIM: 612606) late cornified envelope p ( 114) 591 81.3 3.9e-16
XP_011507023 (OMIM: 612618) PREDICTED: late cornif ( 175) 563 78.1 5.3e-15
NP_848133 (OMIM: 612618) late cornified envelope p ( 99) 518 72.5 1.5e-13
NP_848522 (OMIM: 612617) late cornified envelope p ( 92) 380 55.9 1.4e-08
XP_011507786 (OMIM: 612617) PREDICTED: late cornif ( 92) 380 55.9 1.4e-08
NP_848520 (OMIM: 612614) late cornified envelope p ( 95) 367 54.4 4.1e-08
NP_115952 (OMIM: 612616) late cornified envelope p ( 92) 362 53.7 6.1e-08
NP_848521 (OMIM: 612615) late cornified envelope p ( 94) 360 53.5 7.3e-08
NP_001263260 (OMIM: 612605) late cornified envelop ( 88) 353 52.6 1.3e-07
NP_848518 (OMIM: 612613) late cornified envelope p ( 89) 352 52.5 1.4e-07
NP_001017418 (OMIM: 182268) small proline-rich pro ( 72) 233 38.2 0.0023
NP_005979 (OMIM: 182267) small proline-rich protei ( 72) 233 38.2 0.0023
XP_016857663 (OMIM: 182268) PREDICTED: small proli ( 72) 233 38.2 0.0023
NP_005544 (OMIM: 148021) keratin-associated protei ( 169) 231 38.3 0.005
>>NP_848525 (OMIM: 612619) late cornified envelope prote (118 aa)
initn: 986 init1: 986 opt: 986 Z-score: 666.4 bits: 128.7 E(85289): 2.2e-30
Smith-Waterman score: 986; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
70 80 90 100 110
>>NP_848517 (OMIM: 612612) late cornified envelope prote (110 aa)
initn: 661 init1: 492 opt: 650 Z-score: 449.1 bits: 88.3 E(85289): 2.8e-18
Smith-Waterman score: 652; 68.3% identity (71.4% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSG---
:::::.:::::::::: :::::::::::::::::::: ::: : :::::: :::
NP_848 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCPPQCPAPCSPAVSSCCGPSSGSCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 -----GCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::: :::::::::::: ::: :: .:: : . ::.:::::
NP_848 GPSSGGCCSSGGGGCCLSHHRPRLFHRRRHQSPDCCES------------EPSGASGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
NP_848 SSGGCC
110
>>NP_848130 (OMIM: 612607) late cornified envelope prote (118 aa)
initn: 372 init1: 372 opt: 646 Z-score: 446.1 bits: 87.9 E(85289): 4.1e-18
Smith-Waterman score: 646; 69.8% identity (77.8% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::::::::::::::::::::: :::::::::::::: ::. : .. :
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: ..: :.:::::.::. : ::::::: .:::: .
NP_848 GSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
NP_848 HSGGCC
>>NP_848128 (OMIM: 612605) late cornified envelope prote (118 aa)
initn: 386 init1: 386 opt: 641 Z-score: 442.9 bits: 87.3 E(85289): 6.2e-18
Smith-Waterman score: 641; 69.8% identity (77.0% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::::::::::::::::::::: :::::::::::::: ::. : .. :
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: :.: .:::::.::. : ::::::: .:::: .
NP_848 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
NP_848 HSGGCC
>>NP_848131 (OMIM: 612608) late cornified envelope prote (118 aa)
initn: 398 init1: 398 opt: 640 Z-score: 442.3 bits: 87.2 E(85289): 6.8e-18
Smith-Waterman score: 640; 69.3% identity (77.2% similar) in 127 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..:::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CSSEGGGCC--------LSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCC
::: ::::: ::::: :.: :.:::::.::. : :.::::: .::::
NP_848 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS----QPSAGSSCC--GGGSG--
60 70 80 90 100 110
pF1KE0 HSSGGCC
. :::::
NP_848 QHSGGCC
>>NP_848516 (OMIM: 612611) late cornified envelope prote (110 aa)
initn: 503 init1: 466 opt: 633 Z-score: 438.1 bits: 86.3 E(85289): 1.2e-17
Smith-Waterman score: 635; 67.5% identity (70.6% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSG---
:::::.:::::::::: :::::::::::::::::::: ::: : :::::: :::
NP_848 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCPPQCPAPCFPAVSSCCGPSSGSCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 -----GCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::: .::: ::::::: ::: :: .:: : . ::::::::
NP_848 GPSSGGCCSSGAGGCSLSHHRPRLFHRRRHQSPDCCES------------EPSGGSGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
NP_848 SSGGCC
110
>>NP_055172 (OMIM: 612610) late cornified envelope prote (110 aa)
initn: 591 init1: 458 opt: 632 Z-score: 437.5 bits: 86.2 E(85289): 1.3e-17
Smith-Waterman score: 634; 66.7% identity (70.6% similar) in 126 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGS------
:::::.:::::::::: :::::::::::::::: ::: ::: : ::::::
NP_055 MSCQQNQQQCQPPPKC----PPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGPISGGCC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 --SSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
::::::.: .::::::::::: ::: :: .:: : . ::::::::
NP_055 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCES------------EPSGGSGCCH
60 70 80 90 100
pF1KE0 SSGGCC
::::::
NP_055 SSGGCC
110
>>NP_848125 (OMIM: 612603) late cornified envelope prote (110 aa)
initn: 788 init1: 453 opt: 628 Z-score: 434.9 bits: 85.7 E(85289): 1.7e-17
Smith-Waterman score: 628; 71.4% identity (79.8% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGG
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 CSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
::: :::::::::: ..: :.: :::.::. : ::::::: .: :: . :::::
NP_848 CSSGGGGCCLSHHRRHRSHRHRLQSSGCCS----QPSGGSSCC--GGDSG--QHSGGCC
60 70 80 90 100 110
>>NP_848126 (OMIM: 612604) late cornified envelope prote (118 aa)
initn: 375 init1: 375 opt: 628 Z-score: 434.5 bits: 85.7 E(85289): 1.8e-17
Smith-Waterman score: 628; 67.5% identity (76.2% similar) in 126 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQ---CSAP----CPPPVSSCC
:::::.:::::::::: ::::::: ::.::::::::::: ::. : .. :
NP_848 MSCQQNQQQCQPPPKCIPKCPPKCLTPRCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH
:::::::::: :::::::::: :.: .:::::.::. : ::::::: .:::: .
NP_848 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCS----QPSGGSSCC--GGGSG--Q
70 80 90 100 110
pF1KE0 SSGGCC
:::::
NP_848 HSGGCC
>>NP_848515 (OMIM: 612609) late cornified envelope prote (106 aa)
initn: 550 init1: 550 opt: 621 Z-score: 430.5 bits: 84.9 E(85289): 3.1e-17
Smith-Waterman score: 637; 66.1% identity (72.9% similar) in 118 aa overlap (1-118:1-106)
10 20 30 40 50 60
pF1KE0 MSCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCC
:::::.:::::::::: ::::::: ::: :.:: ::: :. : : ..::::::::::
NP_848 MSCQQNQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 SSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC
:: :::::::::::: :.: :: .:: :. ::::::::::: ::
NP_848 SSGGGGCCLSHHRPRLFHRHRHQSPDCCE------------CEPSGGSGCCHSSGDCC
70 80 90 100
118 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:34:28 2016 done: Thu Nov 3 20:34:29 2016
Total Scan time: 5.240 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]