FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0224, 89 aa
  1>>>pF1KE0224 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7667+/-0.000338; mu= 10.4795+/- 0.021
 mean_var=45.9910+/- 9.408, 0's: 0 Z-trim(112.3): 17  B-trim: 0 in 0/53
 Lambda= 0.189120
 statistics sampled from 21135 (21146) to 21135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.248), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
NP_000406 (OMIM: 147940) islet amyloid polypeptide (  89)  562 160.4 3.4e-40
NP_001316130 (OMIM: 147940) islet amyloid polypept (  89)  562 160.4 3.4e-40
NP_000719 (OMIM: 114160) calcitonin gene-related p ( 127)  145 46.7 8.4e-06
NP_001029125 (OMIM: 114130) calcitonin gene-relate ( 128)  135 44.0 5.6e-05


>>NP_000406 (OMIM: 147940) islet amyloid polypeptide pre  (89 aa)
 initn: 562 init1: 562 opt: 562  Z-score: 842.6  bits: 160.4 E(85289): 3.4e-40
Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAIL
               10        20        30        40        50        60

               70        80         
pF1KE0 SSTNVGSNTYGKRNAVEVLKREPLNYLPL
       :::::::::::::::::::::::::::::
NP_000 SSTNVGSNTYGKRNAVEVLKREPLNYLPL
               70        80         

>>NP_001316130 (OMIM: 147940) islet amyloid polypeptide   (89 aa)
 initn: 562 init1: 562 opt: 562  Z-score: 842.6  bits: 160.4 E(85289): 3.4e-40
Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKCNTATCATQRLANFLVHSSNNFGAIL
               10        20        30        40        50        60

               70        80         
pF1KE0 SSTNVGSNTYGKRNAVEVLKREPLNYLPL
       :::::::::::::::::::::::::::::
NP_001 SSTNVGSNTYGKRNAVEVLKREPLNYLPL
               70        80         

>>NP_000719 (OMIM: 114160) calcitonin gene-related pepti  (127 aa)
 initn: 159 init1: 135 opt: 145  Z-score: 225.2  bits: 46.7 E(85289): 8.4e-06
Smith-Waterman score: 145; 36.8% identity (70.6% similar) in 68 aa overlap (6-73:54-121)

                                        10        20        30     
pF1KE0                          MGILKLQVFLIVLSVALNHLKATPIESHQVEKRKC
                                     .: .. . .  :.. . :   :  ..:: :
NP_000 QAAPFRSALESSPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRAC
            30        40        50        60        70        80   

          40        50        60        70        80         
pF1KE0 NTATCATQRLANFLVHSSNNFGAILSSTNVGSNTYGKRNAVEVLKREPLNYLPL
       :::::.:.:::..: .:..   . .  :::::...:.:                
NP_000 NTATCVTHRLAGLLSRSGGMVKSNFVPTNVGSKAFGRRRRDLQA          
            90       100       110       120                 

>>NP_001029125 (OMIM: 114130) calcitonin gene-related pe  (128 aa)
 initn: 143 init1: 127 opt: 135  Z-score: 210.4  bits: 44.0 E(85289): 5.6e-05
Smith-Waterman score: 135; 34.7% identity (68.0% similar) in 75 aa overlap (7-73:48-122)

                                       10        20                
pF1KE0                         MGILKLQVFLIVLSVALNHLKATPIESHQ-------
                                     ...: .:     ..::. .:..:       
NP_001 LQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQMKASELEQEQEREGSRI
        20        30        40        50        60        70       

       30        40        50        60        70        80        
pF1KE0 -VEKRKCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTYGKRNAVEVLKREPLNYLP
        ..:: :.::::.:.:::..: .:..     .  :::::...:.:               
NP_001 IAQKRACDTATCVTHRLAGLLSRSGGVVKNNFVPTNVGSKAFGRRRRDLQA         
        80        90       100       110       120                 

        
pF1KE0 L




89 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:21:30 2016 done: Sat Nov  5 01:21:30 2016
 Total Scan time:  3.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]