FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0223, 79 aa
  1>>>pF1KE0223 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6087+/-0.000578; mu= 12.6546+/- 0.035
 mean_var=75.9176+/-15.019, 0's: 0 Z-trim(113.7): 62  B-trim: 0 in 0/53
 Lambda= 0.147198
 statistics sampled from 14233 (14297) to 14233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.439), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS14176.1 S100G gene_id:795|Hs108|chrX           (  79)  505 114.9 5.2e-27


>>CCDS14176.1 S100G gene_id:795|Hs108|chrX                (79 aa)
 initn: 505 init1: 505 opt: 505  Z-score: 598.4  bits: 114.9 E(32554): 5.2e-27
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE0 MSTKKSPEELKRIFEKYAAKEGDPDQLSKDELKLLIQAEFPSLLKGPNTLDDLFQELDKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSTKKSPEELKRIFEKYAAKEGDPDQLSKDELKLLIQAEFPSLLKGPNTLDDLFQELDKN
               10        20        30        40        50        60

               70         
pF1KE0 GDGEVSFEEFQVLVKKISQ
       :::::::::::::::::::
CCDS14 GDGEVSFEEFQVLVKKISQ
               70         




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:47:00 2016 done: Thu Nov  3 20:47:01 2016
 Total Scan time:  1.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]