FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0220, 68 aa
  1>>>pF1KE0220 68 - 68 aa - 68 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5952+/-0.000293; mu= 9.8019+/- 0.018
 mean_var=45.8104+/- 9.341, 0's: 0 Z-trim(115.0): 5  B-trim: 1256 in 1/54
 Lambda= 0.189493
 statistics sampled from 25180 (25182) to 25180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.295), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(85289)
NP_001012474 (OMIM: 609215) protein transport prot (  68)  449 129.5   4e-31
NP_055117 (OMIM: 609215) protein transport protein (  68)  449 129.5   4e-31


>>NP_001012474 (OMIM: 609215) protein transport protein   (68 aa)
 initn: 449 init1: 449 opt: 449  Z-score: 679.8  bits: 129.5 E(85289): 4e-31
Smith-Waterman score: 449; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE0 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP
               10        20        30        40        50        60

               
pF1KE0 INNIIVGG
       ::::::::
NP_001 INNIIVGG
               

>>NP_055117 (OMIM: 609215) protein transport protein Sec  (68 aa)
 initn: 449 init1: 449 opt: 449  Z-score: 679.8  bits: 129.5 E(85289): 4e-31
Smith-Waterman score: 449; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE0 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP
               10        20        30        40        50        60

               
pF1KE0 INNIIVGG
       ::::::::
NP_055 INNIIVGG
               




68 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:51:07 2016 done: Thu Nov  3 20:51:07 2016
 Total Scan time:  3.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]