FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0218, 178 aa
  1>>>pF1KE0218 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0478+/-0.00099; mu= 14.0338+/- 0.059
 mean_var=63.1123+/-12.899, 0's: 0 Z-trim(103.4): 15  B-trim: 0 in 0/52
 Lambda= 0.161442
 statistics sampled from 7391 (7395) to 7391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.227), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS5767.1 CAV1 gene_id:857|Hs108|chr7             ( 178) 1200 288.1   2e-78
CCDS55156.1 CAV1 gene_id:857|Hs108|chr7            ( 147)  989 238.9 1.1e-63
CCDS2569.1 CAV3 gene_id:859|Hs108|chr3             ( 151)  703 172.3 1.2e-43
CCDS5766.1 CAV2 gene_id:858|Hs108|chr7             ( 162)  355 91.2 3.3e-19


>>CCDS5767.1 CAV1 gene_id:857|Hs108|chr7                  (178 aa)
 initn: 1200 init1: 1200 opt: 1200  Z-score: 1521.5  bits: 288.1 E(32554): 2e-78
Smith-Waterman score: 1200; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KE0 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KE0 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
              130       140       150       160       170        

>>CCDS55156.1 CAV1 gene_id:857|Hs108|chr7                 (147 aa)
 initn: 989 init1: 989 opt: 989  Z-score: 1257.1  bits: 238.9 E(32554): 1.1e-63
Smith-Waterman score: 989; 100.0% identity (100.0% similar) in 147 aa overlap (32-178:1-147)

              10        20        30        40        50        60 
pF1KE0 SGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLND
                                     ::::::::::::::::::::::::::::::
CCDS55                               MADELSEKQVYDAHTKEIDLVNRDPKHLND
                                             10        20        30

              70        80        90       100       110       120 
pF1KE0 DVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAI
               40        50        60        70        80        90

             130       140       150       160       170        
pF1KE0 LSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
              100       110       120       130       140       

>>CCDS2569.1 CAV3 gene_id:859|Hs108|chr3                  (151 aa)
 initn: 691 init1: 678 opt: 703  Z-score: 896.9  bits: 172.3 E(32554): 1.2e-43
Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (32-178:2-151)

              10        20        30           40        50        
pF1KE0 SGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADE---LSEKQVYDAHTKEIDLVNRDPKH
                                     ::.:   :  . : : : :::::::::::.
CCDS25                              MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKN
                                            10        20        30 

       60        70        80        90       100       110        
pF1KE0 LNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIY
       .:.:.::.::::::::: ::.::::.::.:.:::::.::: :::::.:.:.:.::.::. 
CCDS25 INEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFL
              40        50        60        70        80        90 

      120       130       140       150       160       170        
pF1KE0 FAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
       :: .:: :::::::::::.::::::::..::. ..: :.::: :.:.. :.... :.::.
CCDS25 FACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
             100       110       120       130       140       150 

>>CCDS5766.1 CAV2 gene_id:858|Hs108|chr7                  (162 aa)
 initn: 359 init1: 321 opt: 355  Z-score: 458.4  bits: 91.2 E(32554): 3.3e-19
Smith-Waterman score: 355; 40.8% identity (74.4% similar) in 125 aa overlap (53-177:39-162)

             30        40        50        60        70        80  
pF1KE0 NIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFD
                                     .:::..::. . :. ::::::::  :::::
CCDS57 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD
       10        20        30        40         50        60       

             90       100       110       120       130       140  
pF1KE0 GIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQ
        .:  : . : ..:: .:..:.....::.:.: :: :: :: :::: ..: .:. :. . 
CCDS57 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP
        70        80        90       100       110       120       

            150       160       170        
pF1KE0 CISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
        .. ...  . ..  ::  .::. ::.: ..:... 
CCDS57 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 
       130       140       150       160   




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:49:10 2016 done: Sat Nov  5 01:49:10 2016
 Total Scan time:  1.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]