FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0215, 111 aa
  1>>>pF1KE0215 111 - 111 aa - 111 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1921+/-0.000272; mu= 16.1784+/- 0.017
 mean_var=53.7500+/-10.363, 0's: 0 Z-trim(119.4): 16  B-trim: 346 in 1/49
 Lambda= 0.174938
 statistics sampled from 33330 (33346) to 33330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.391), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(85289)
NP_004878 (OMIM: 604186) C-X-C motif chemokine 14  ( 111)  752 196.5 7.4e-51
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  167 48.8   2e-06
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  154 45.6 1.9e-05
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  153 45.3 2.3e-05
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125)  125 38.3  0.0035


>>NP_004878 (OMIM: 604186) C-X-C motif chemokine 14 prec  (111 aa)
 initn: 752 init1: 752 opt: 752  Z-score: 1034.0  bits: 196.5 E(85289): 7.4e-51
Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KE0 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGSKCKCSRKGPKIRYSDVKKLEMKPKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGSKCKCSRKGPKIRYSDVKKLEMKPKY
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KE0 PHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRVYEE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRVYEE
               70        80        90       100       110 

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn: 163 init1:  60 opt: 167  Z-score: 236.3  bits: 48.8 E(85289): 2e-06
Smith-Waterman score: 167; 33.3% identity (60.4% similar) in 96 aa overlap (8-97:8-98)

               10        20        30              40        50    
pF1KE0 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGS------KCKCSRKGPKIRYSDVKKL
              : : . ::: .:::::::.  . :. :.      .:.: .    :. ......
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

           60        70        80        90       100       110 
pF1KE0 EMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRVYEE
       ..:   ::: .  :: : :.     ::. ::.:    .:..:.              
NP_002 KVKSPGPHCAQTEVIATLKN-----GQKACLNPASPMVKKIIEKMLKNGKSN     
               70        80             90       100            

>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu  (107 aa)
 initn: 153 init1:  60 opt: 154  Z-score: 218.6  bits: 45.6 E(85289): 1.9e-05
Smith-Waterman score: 154; 30.2% identity (60.4% similar) in 96 aa overlap (8-97:8-98)

               10        20        30              40        50    
pF1KE0 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGS------KCKCSRKGPKIRYSDVKKL
              : : . ::: .:::::::.  . :. :.      .:.: .    :. ......
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

           60        70        80        90       100       110 
pF1KE0 EMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRVYEE
       ...   ::: .  :: : :.     :.. ::.:    ....:.              
NP_002 NVRSPGPHCAQTEVIATLKN-----GKKACLNPASPMVQKIIEKILNKGSTN     
               70        80             90       100            

>>NP_001502 (OMIM: 155730) growth-regulated alpha protei  (107 aa)
 initn: 135 init1:  60 opt: 153  Z-score: 217.2  bits: 45.3 E(85289): 2.3e-05
Smith-Waterman score: 153; 32.3% identity (59.4% similar) in 96 aa overlap (8-97:8-98)

               10        20        30              40        50    
pF1KE0 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGS------KCKCSRKGPKIRYSDVKKL
              : : . ::: .:::::::.    :. :.      .:.: .    :. ......
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV
               10        20        30        40        50        60

           60        70        80        90       100       110 
pF1KE0 EMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKWYNAWNEKRRVYEE
       ..:   ::: .  :: : :.     :.. ::.:    .:..:.              
NP_001 NVKSPGPHCAQTEVIATLKN-----GRKACLNPASPIVKKIIEKMLNSDKSN     
               70        80             90       100            

>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu  (125 aa)
 initn:  81 init1:  47 opt: 125  Z-score: 178.1  bits: 38.3 E(85289): 0.0035
Smith-Waterman score: 125; 29.5% identity (58.9% similar) in 95 aa overlap (15-107:9-98)

               10        20        30         40        50         
pF1KE0 MSLLPRRAPPVSMRLLAAALLLLLLALYTARVDGSKCKC-SRKGPKIRYSDVKKLEMKPK
                     ::.  ::.:. .  :  :  ..:.: : .   :. ...: :..   
NP_002       MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAP
                     10        20        30        40        50    

      60        70        80        90        100       110        
pF1KE0 YPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIK-WYNAWNEKRRVYEE       
        : ::.  .: : :.     : . ::.:   ..:..:: : .  ..:..           
NP_002 SPSCEKIEIIATLKN-----GVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKK
           60             70        80        90       100         

NP_002 VLKVRKSQRSRQKKTT
     110       120     




111 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:58:35 2016 done: Thu Nov  3 20:58:36 2016
 Total Scan time:  3.560 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]