Result of FASTA (omim) for
pF1KE0212
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0212, 61 aa
1>>>pF1KE0212 61 - 61 aa - 61 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7432+/-0.000298; mu= 5.9813+/- 0.019
mean_var=139.6767+/-27.604, 0's: 0 Z-trim(122.9): 36 B-trim: 259 in 2/50
Lambda= 0.108521
statistics sampled from 41646 (41690) to 41646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.489), width: 16
Scan time: 2.770
The best scores are: opt bits E(85289)
NP_005943 (OMIM: 156359) metallothionein-1X [Homo ( 61) 516 89.9 2.8e-19
NP_783316 (OMIM: 156351) metallothionein-1E [Homo ( 61) 475 83.5 2.4e-17
NP_005944 (OMIM: 156360) metallothionein-2 [Homo s ( 61) 473 83.1 3e-17
NP_005938 (OMIM: 156349) metallothionein-1B [Homo ( 61) 471 82.8 3.7e-17
NP_005942 (OMIM: 156354) metallothionein-1H [Homo ( 61) 470 82.7 4.1e-17
NP_001288196 (OMIM: 156353) metallothionein-1G iso ( 62) 460 81.1 1.2e-16
NP_005937 (OMIM: 156350) metallothionein-1A [Homo ( 61) 459 81.0 1.4e-16
NP_005941 (OMIM: 156353) metallothionein-1G isofor ( 61) 456 80.5 1.9e-16
NP_005940 (OMIM: 156352) metallothionein-1F isofor ( 61) 454 80.2 2.3e-16
NP_789846 (OMIM: 156357) metallothionein-1M [Homo ( 61) 449 79.4 4e-16
NP_116324 (OMIM: 606206) metallothionein-4 [Homo s ( 62) 367 66.6 3e-12
NP_005945 (OMIM: 139255) metallothionein-3 [Homo s ( 68) 357 65.0 9.3e-12
XP_005256013 (OMIM: 156351) PREDICTED: metallothio ( 127) 242 47.4 3.6e-06
NP_001288201 (OMIM: 156352) metallothionein-1F iso ( 44) 233 45.4 4.9e-06
NP_001005922 (OMIM: 148022) keratin-associated pro ( 278) 189 39.5 0.0018
NP_005544 (OMIM: 148021) keratin-associated protei ( 169) 179 37.7 0.004
>>NP_005943 (OMIM: 156359) metallothionein-1X [Homo sapi (61 aa)
initn: 516 init1: 516 opt: 516 Z-score: 467.1 bits: 89.9 E(85289): 2.8e-19
Smith-Waterman score: 516; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_783316 (OMIM: 156351) metallothionein-1E [Homo sapi (61 aa)
initn: 475 init1: 475 opt: 475 Z-score: 432.5 bits: 83.5 E(85289): 2.4e-17
Smith-Waterman score: 475; 88.5% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. :::.::::::::::::::::::::::::::::::::::.:::.:.:::::
NP_783 MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_783 A
>>NP_005944 (OMIM: 156360) metallothionein-2 [Homo sapie (61 aa)
initn: 473 init1: 473 opt: 473 Z-score: 430.8 bits: 83.1 E(85289): 3e-17
Smith-Waterman score: 473; 90.2% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.::::::::::::::::::::::::::::::::::::::.:::::::
NP_005 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_005938 (OMIM: 156349) metallothionein-1B [Homo sapi (61 aa)
initn: 471 init1: 471 opt: 471 Z-score: 429.1 bits: 82.8 E(85289): 3.7e-17
Smith-Waterman score: 471; 86.9% identity (93.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::::::::::::::::::::: ::::::::::::::::.:::.:.:: ::
NP_005 MDPNCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_005942 (OMIM: 156354) metallothionein-1H [Homo sapi (61 aa)
initn: 470 init1: 470 opt: 470 Z-score: 428.2 bits: 82.7 E(85289): 4.1e-17
Smith-Waterman score: 470; 88.5% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
::::::: ::::::::::::.:::::::::::::::.:::::::::::::.:.:::::
NP_005 MDPNCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_001288196 (OMIM: 156353) metallothionein-1G isoform (62 aa)
initn: 401 init1: 401 opt: 460 Z-score: 419.7 bits: 81.1 E(85289): 1.2e-16
Smith-Waterman score: 460; 87.1% identity (96.8% similar) in 62 aa overlap (1-61:1-62)
10 20 30 40 50
pF1KE0 MDPNCSCSPVG-SCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSC
:::::::. .: ::.::.:::::::::::::::::::::::::::::::::::.:.::::
NP_001 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50 60
60
pF1KE0 CA
::
NP_001 CA
>>NP_005937 (OMIM: 156350) metallothionein-1A [Homo sapi (61 aa)
initn: 459 init1: 459 opt: 459 Z-score: 418.9 bits: 81.0 E(85289): 1.4e-16
Smith-Waterman score: 459; 85.2% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. :::.:.::::::::::::::::::::::..::::::::::::.:.:::::
NP_005 MDPNCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_005941 (OMIM: 156353) metallothionein-1G isoform 1 (61 aa)
initn: 456 init1: 456 opt: 456 Z-score: 416.4 bits: 80.5 E(85289): 1.9e-16
Smith-Waterman score: 456; 86.9% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.::.:::::::::::::::::::::::::::::::::::.:.:::::
NP_005 MDPNCSCAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_005 A
>>NP_005940 (OMIM: 156352) metallothionein-1F isoform 1 (61 aa)
initn: 454 init1: 454 opt: 454 Z-score: 414.7 bits: 80.2 E(85289): 2.3e-16
Smith-Waterman score: 454; 85.0% identity (95.0% similar) in 60 aa overlap (1-60:1-60)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.:::::::::::::::::::::::::::.::::::.:::.:.:::::
NP_005 MDPNCSCAAGVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
NP_005 D
>>NP_789846 (OMIM: 156357) metallothionein-1M [Homo sapi (61 aa)
initn: 449 init1: 449 opt: 449 Z-score: 410.5 bits: 79.4 E(85289): 4e-16
Smith-Waterman score: 449; 83.6% identity (93.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::::.:::::::::::::::::::::::::::::.::.:::: ..::::
NP_789 MDPNCSCTTGVSCACTGSCKCKECKCTSCKKSCCSCCPVGCAKCAHGCVCKGTLENCSCC
10 20 30 40 50 60
pF1KE0 A
:
NP_789 A
61 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:06:19 2016 done: Thu Nov 3 21:06:20 2016
Total Scan time: 2.770 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]