Result of FASTA (ccds) for
pF1KE0212
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0212, 61 aa
1>>>pF1KE0212 61 - 61 aa - 61 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7040+/-0.000738; mu= 6.3652+/- 0.045
mean_var=145.0745+/-27.513, 0's: 0 Z-trim(115.8): 65 B-trim: 0 in 0/51
Lambda= 0.106483
statistics sampled from 16259 (16330) to 16259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.502), width: 16
Scan time: 1.180
The best scores are: opt bits E(32554)
CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 ( 61) 516 88.4 3e-19
CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 ( 61) 475 82.1 2.4e-17
CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 ( 61) 473 81.8 2.9e-17
CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 ( 61) 471 81.5 3.6e-17
CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 ( 61) 470 81.3 4e-17
CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 ( 62) 460 79.8 1.2e-16
CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 ( 61) 459 79.6 1.3e-16
CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 ( 61) 456 79.2 1.8e-16
CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 ( 61) 454 78.9 2.2e-16
CCDS42166.1 MT1M gene_id:4499|Hs108|chr16 ( 61) 442 77.0 8e-16
CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1 ( 61) 439 76.5 1.1e-15
CCDS10762.1 MT3 gene_id:4504|Hs108|chr16 ( 68) 357 64.0 7.2e-12
CCDS42165.1 MT4 gene_id:84560|Hs108|chr16 ( 62) 345 62.1 2.5e-11
>>CCDS10768.1 MT1X gene_id:4501|Hs108|chr16 (61 aa)
initn: 516 init1: 516 opt: 516 Z-score: 459.0 bits: 88.4 E(32554): 3e-19
Smith-Waterman score: 516; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS10764.2 MT1E gene_id:4493|Hs108|chr16 (61 aa)
initn: 475 init1: 475 opt: 475 Z-score: 425.0 bits: 82.1 E(32554): 2.4e-17
Smith-Waterman score: 475; 88.5% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. :::.::::::::::::::::::::::::::::::::::.:::.:.:::::
CCDS10 MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS10763.1 MT2A gene_id:4502|Hs108|chr16 (61 aa)
initn: 473 init1: 473 opt: 473 Z-score: 423.3 bits: 81.8 E(32554): 2.9e-17
Smith-Waterman score: 473; 90.2% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.::::::::::::::::::::::::::::::::::::::.:::::::
CCDS10 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS10765.1 MT1B gene_id:4490|Hs108|chr16 (61 aa)
initn: 471 init1: 471 opt: 471 Z-score: 421.7 bits: 81.5 E(32554): 3.6e-17
Smith-Waterman score: 471; 86.9% identity (93.4% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::::::::::::::::::::: ::::::::::::::::.:::.:.:: ::
CCDS10 MDPNCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS10767.1 MT1H gene_id:4496|Hs108|chr16 (61 aa)
initn: 470 init1: 470 opt: 470 Z-score: 420.8 bits: 81.3 E(32554): 4e-17
Smith-Waterman score: 470; 88.5% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
::::::: ::::::::::::.:::::::::::::::.:::::::::::::.:.:::::
CCDS10 MDPNCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS76873.1 MT1G gene_id:4495|Hs108|chr16 (62 aa)
initn: 401 init1: 401 opt: 460 Z-score: 412.5 bits: 79.8 E(32554): 1.2e-16
Smith-Waterman score: 460; 87.1% identity (96.8% similar) in 62 aa overlap (1-61:1-62)
10 20 30 40 50
pF1KE0 MDPNCSCSPVG-SCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSC
:::::::. .: ::.::.:::::::::::::::::::::::::::::::::::.:.::::
CCDS76 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50 60
60
pF1KE0 CA
::
CCDS76 CA
>>CCDS32454.1 MT1A gene_id:4489|Hs108|chr16 (61 aa)
initn: 459 init1: 459 opt: 459 Z-score: 411.7 bits: 79.6 E(32554): 1.3e-16
Smith-Waterman score: 459; 85.2% identity (96.7% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. :::.:.::::::::::::::::::::::..::::::::::::.:.:::::
CCDS32 MDPNCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS32 A
>>CCDS10766.1 MT1G gene_id:4495|Hs108|chr16 (61 aa)
initn: 456 init1: 456 opt: 456 Z-score: 409.2 bits: 79.2 E(32554): 1.8e-16
Smith-Waterman score: 456; 86.9% identity (95.1% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.::.:::::::::::::::::::::::::::::::::::.:.:::::
CCDS10 MDPNCSCAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS10 A
>>CCDS32456.1 MT1F gene_id:4494|Hs108|chr16 (61 aa)
initn: 454 init1: 454 opt: 454 Z-score: 407.6 bits: 78.9 E(32554): 2.2e-16
Smith-Waterman score: 454; 85.0% identity (95.0% similar) in 60 aa overlap (1-60:1-60)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::.:::::::::::::::::::::::::::.::::::.:::.:.:::::
CCDS32 MDPNCSCAAGVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSCC
10 20 30 40 50 60
pF1KE0 A
CCDS32 D
>>CCDS42166.1 MT1M gene_id:4499|Hs108|chr16 (61 aa)
initn: 442 init1: 442 opt: 442 Z-score: 397.6 bits: 77.0 E(32554): 8e-16
Smith-Waterman score: 442; 82.0% identity (91.8% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KE0 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
:::::::. ::::.::: :::::::::::::::::::::::::.::.:::: ..::::
CCDS42 MDPNCSCTTGVSCACTGSCTCKECKCTSCKKSCCSCCPVGCAKCAHGCVCKGTLENCSCC
10 20 30 40 50 60
pF1KE0 A
:
CCDS42 A
61 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:06:18 2016 done: Thu Nov 3 21:06:18 2016
Total Scan time: 1.180 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]