FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0207, 277 aa
  1>>>pF1KE0207 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0230+/-0.000784; mu= 7.0558+/- 0.048
 mean_var=250.6721+/-50.210, 0's: 0 Z-trim(117.8): 4  B-trim: 5 in 1/54
 Lambda= 0.081007
 statistics sampled from 18654 (18657) to 18654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.573), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS9551.1 TMEM55B gene_id:90809|Hs108|chr14       ( 277) 2020 247.8 6.2e-66
CCDS41911.1 TMEM55B gene_id:90809|Hs108|chr14      ( 284) 1996 245.0 4.4e-65
CCDS6252.1 TMEM55A gene_id:55529|Hs108|chr8        ( 257)  955 123.3 1.7e-28


>>CCDS9551.1 TMEM55B gene_id:90809|Hs108|chr14            (277 aa)
 initn: 2020 init1: 2020 opt: 2020  Z-score: 1297.2  bits: 247.8 E(32554): 6.2e-66
Smith-Waterman score: 2020; 99.6% identity (99.6% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE0 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FLWTEFTDRTLARCPHCRKVSSIGRRYTRKRCICCFLLGLLLAVTATGLAFGTWKHARRY
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS95 FLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRY
              190       200       210       220       230       240

              250       260       270       
pF1KE0 GGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
       :::::::::::::::::::::::::::::::::::::
CCDS95 GGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
              250       260       270       

>>CCDS41911.1 TMEM55B gene_id:90809|Hs108|chr14           (284 aa)
 initn: 1701 init1: 1701 opt: 1996  Z-score: 1281.9  bits: 245.0 E(32554): 4.4e-65
Smith-Waterman score: 1996; 97.2% identity (97.2% similar) in 284 aa overlap (1-277:1-284)

               10        20        30        40               50   
pF1KE0 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGA-------AFPPFP
       :::::::::::::::::::::::::::::::::::::::::::::::       ::::::
CCDS41 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE0 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE0 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KE0 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYTRKRCICCFLLGLLLAVTATGLAFGT
       :::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS41 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT
              190       200       210       220       230       240

           240       250       260       270       
pF1KE0 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
              250       260       270       280    

>>CCDS6252.1 TMEM55A gene_id:55529|Hs108|chr8             (257 aa)
 initn: 1070 init1: 555 opt: 955  Z-score: 624.9  bits: 123.3 E(32554): 1.7e-28
Smith-Waterman score: 996; 52.4% identity (72.0% similar) in 286 aa overlap (1-277:1-257)

                 10        20        30        40        50        
pF1KE0 MAADG--ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPA
       :::::  :::::::                   :. .:..::.::::      . :. : 
CCDS62 MAADGVDERSPLLS-------------------ASHSGNVTPTAPPY------LQESSPR
               10                           20              30     

       60        70        80        90       100       110        
pF1KE0 VLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPP
       .   : ::::. ..:::... :.:.:::::::::..::.::::::: :::::::::: : 
CCDS62 A---ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPT
             40        50        60        70        80        90  

      120       130       140       150           160         170  
pF1KE0 GKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPV----HPGPLSPE-P-QPMGVRV
       :::::::::::::::: ::.::.:::: :.::::::::    .  : .:  : :: :.::
CCDS62 GKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV
            100       110       120       130       140       150  

            180       190       200       210        220       230 
pF1KE0 ICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYTRKRCICCFL-LGLLLAVTATGLAF
       .:::: ::::: :.   :::.::::.:.::.:    :.:: : .. .:..    ..::. 
CCDS62 VCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRC-CAYITIGMICIFIGVGLTV
            160       170       180       190        200       210 

             240       250       260       270       
pF1KE0 GTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
       ::   :::. . :..::.. ::...:: :: ::. ..::.: ..:.
CCDS62 GTPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA
             220       230       240       250       




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:15:15 2016 done: Thu Nov  3 21:15:15 2016
 Total Scan time:  2.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]