FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0201, 83 aa
  1>>>pF1KE0201 83 - 83 aa - 83 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8712+/-0.000245; mu= 11.2088+/- 0.015
 mean_var=59.5241+/-11.672, 0's: 0 Z-trim(121.2): 3  B-trim: 0 in 0/56
 Lambda= 0.166237
 statistics sampled from 37441 (37444) to 37441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.439), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(85289)
NP_001636 (OMIM: 107710) apolipoprotein C-I precur (  83)  515 130.4 3.2e-31
NP_001307994 (OMIM: 107710) apolipoprotein C-I pre (  83)  515 130.4 3.2e-31
NP_001307995 (OMIM: 107710) apolipoprotein C-I pre (  83)  515 130.4 3.2e-31


>>NP_001636 (OMIM: 107710) apolipoprotein C-I precursor   (83 aa)
 initn: 515 init1: 515 opt: 515  Z-score: 681.5  bits: 130.4 E(85289): 3.2e-31
Smith-Waterman score: 515; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KE0 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
               10        20        30        40        50        60

               70        80   
pF1KE0 SAKMREWFSETFQKVKEKLKIDS
       :::::::::::::::::::::::
NP_001 SAKMREWFSETFQKVKEKLKIDS
               70        80   

>>NP_001307994 (OMIM: 107710) apolipoprotein C-I precurs  (83 aa)
 initn: 515 init1: 515 opt: 515  Z-score: 681.5  bits: 130.4 E(85289): 3.2e-31
Smith-Waterman score: 515; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KE0 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
               10        20        30        40        50        60

               70        80   
pF1KE0 SAKMREWFSETFQKVKEKLKIDS
       :::::::::::::::::::::::
NP_001 SAKMREWFSETFQKVKEKLKIDS
               70        80   

>>NP_001307995 (OMIM: 107710) apolipoprotein C-I precurs  (83 aa)
 initn: 515 init1: 515 opt: 515  Z-score: 681.5  bits: 130.4 E(85289): 3.2e-31
Smith-Waterman score: 515; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KE0 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSEL
               10        20        30        40        50        60

               70        80   
pF1KE0 SAKMREWFSETFQKVKEKLKIDS
       :::::::::::::::::::::::
NP_001 SAKMREWFSETFQKVKEKLKIDS
               70        80   




83 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:37:02 2016 done: Thu Nov  3 21:37:03 2016
 Total Scan time:  4.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]