FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0197, 119 aa
  1>>>pF1KE0197 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2489+/-0.000672; mu= 12.1107+/- 0.041
 mean_var=77.7368+/-14.586, 0's: 0 Z-trim(111.7): 33  B-trim: 25 in 1/50
 Lambda= 0.145466
 statistics sampled from 12524 (12556) to 12524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.386), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS31186.1 CXCL12 gene_id:6387|Hs108|chr10        ( 119)  782 172.3 6.2e-44
CCDS7207.1 CXCL12 gene_id:6387|Hs108|chr10         (  89)  592 132.3   5e-32
CCDS44373.1 CXCL12 gene_id:6387|Hs108|chr10        (  93)  592 132.3 5.2e-32
CCDS53527.1 CXCL12 gene_id:6387|Hs108|chr10        ( 140)  594 132.9 5.3e-32


>>CCDS31186.1 CXCL12 gene_id:6387|Hs108|chr10             (119 aa)
 initn: 782 init1: 782 opt: 782  Z-score: 902.2  bits: 172.3 E(32554): 6.2e-44
Smith-Waterman score: 782; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
               70        80        90       100       110         

>>CCDS7207.1 CXCL12 gene_id:6387|Hs108|chr10              (89 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 688.4  bits: 132.3 E(32554): 5e-32
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::                              
CCDS72 ARLKNNNRQVCIDPKLKWIQEYLEKALNK                              
               70        80                                       

>>CCDS44373.1 CXCL12 gene_id:6387|Hs108|chr10             (93 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 688.2  bits: 132.3 E(32554): 5.2e-32
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
       :::::::::::::::::::::::::::::                              
CCDS44 ARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM                          
               70        80        90                             

>>CCDS53527.1 CXCL12 gene_id:6387|Hs108|chr10             (140 aa)
 initn: 627 init1: 591 opt: 594  Z-score: 688.0  bits: 132.9 E(32554): 5.3e-32
Smith-Waterman score: 594; 86.7% identity (90.5% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 
       ::::::::::::::::::::::::::::.      .::.   : .               
CCDS53 ARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRVIAGARALHPSPPRACPTARA
               70        80        90       100       110       120

CCDS53 LCEIRLWPPPEWSWPSPGDV
              130       140




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:21:06 2016 done: Sat Nov  5 01:21:06 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]