FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0192, 87 aa
  1>>>pF1KE0192 87 - 87 aa - 87 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5232+/-0.000242; mu= 8.2800+/- 0.015
 mean_var=74.4238+/-14.755, 0's: 0 Z-trim(123.0): 28  B-trim: 481 in 1/53
 Lambda= 0.148668
 statistics sampled from 41941 (41969) to 41941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.492), width:  16
 Scan time:  4.130

The best scores are:                                      opt bits E(85289)
XP_016873373 (OMIM: 608016) PREDICTED: cytochrome  (  87)  623 141.3 1.9e-34
NP_057649 (OMIM: 608016) cytochrome c oxidase asse (  87)  623 141.3 1.9e-34
XP_016873372 (OMIM: 608016) PREDICTED: cytochrome  (  96)  623 141.3   2e-34


>>XP_016873373 (OMIM: 608016) PREDICTED: cytochrome c ox  (87 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 739.5  bits: 141.3 E(85289): 1.9e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:1-87)

               10        20        30        40        50        60
pF1KE0 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA
               10        20        30        40        50        60

               70        80       
pF1KE0 FKDCMSEQQARRQEELQRRQEQAGAHH
       :::::::::::::::::::::::::::
XP_016 FKDCMSEQQARRQEELQRRQEQAGAHH
               70        80       

>>NP_057649 (OMIM: 608016) cytochrome c oxidase assembly  (87 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 739.5  bits: 141.3 E(85289): 1.9e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:1-87)

               10        20        30        40        50        60
pF1KE0 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA
               10        20        30        40        50        60

               70        80       
pF1KE0 FKDCMSEQQARRQEELQRRQEQAGAHH
       :::::::::::::::::::::::::::
NP_057 FKDCMSEQQARRQEELQRRQEQAGAHH
               70        80       

>>XP_016873372 (OMIM: 608016) PREDICTED: cytochrome c ox  (96 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 738.9  bits: 141.3 E(85289): 2e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:10-96)

                        10        20        30        40        50 
pF1KE0          MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDW
                :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYRLPIPRMSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDW
               10        20        30        40        50        60

              60        70        80       
pF1KE0 RQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAHH
       ::::::::::::::::::::::::::::::::::::
XP_016 RQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAHH
               70        80        90      




87 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:47:24 2016 done: Thu Nov  3 21:47:25 2016
 Total Scan time:  4.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]