FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0191, 131 aa
  1>>>pF1KE0191 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7837+/-0.000763; mu= 12.7974+/- 0.046
 mean_var=49.2766+/- 9.772, 0's: 0 Z-trim(106.1): 14  B-trim: 63 in 1/47
 Lambda= 0.182706
 statistics sampled from 8788 (8793) to 8788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.27), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS14653.1 MMGT1 gene_id:93380|Hs108|chrX         ( 131)  845 230.0 3.2e-61


>>CCDS14653.1 MMGT1 gene_id:93380|Hs108|chrX              (131 aa)
 initn: 845 init1: 845 opt: 845  Z-score: 1212.5  bits: 230.0 E(32554): 3.2e-61
Smith-Waterman score: 845; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KE0 MAPSLWKGLVGIGLFALAHAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAPSLWKGLVGIGLFALAHAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VHIAGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVLFRPSDTANSSNQDALSSNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VHIAGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVLFRPSDTANSSNQDALSSNTS
               70        80        90       100       110       120

              130 
pF1KE0 LKLRKLESLRR
       :::::::::::
CCDS14 LKLRKLESLRR
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:07:14 2016 done: Thu Nov  3 22:07:14 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]