Result of FASTA (omim) for
pF1KE0186
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0186, 220 aa
1>>>pF1KE0186 220 - 220 aa - 220 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5495+/-0.000357; mu= 18.0988+/- 0.022
mean_var=63.6752+/-13.015, 0's: 0 Z-trim(113.8): 18 B-trim: 0 in 0/49
Lambda= 0.160727
statistics sampled from 23253 (23271) to 23253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.273), width: 16
Scan time: 6.020
The best scores are: opt bits E(85289)
XP_005248668 (OMIM: 610800) PREDICTED: ubiquitin-l ( 220) 1540 365.5 3.9e-101
XP_005248667 (OMIM: 610800) PREDICTED: ubiquitin-l ( 220) 1540 365.5 3.9e-101
NP_113670 (OMIM: 610800) ubiquitin-like-conjugatin ( 220) 1540 365.5 3.9e-101
NP_001124500 (OMIM: 610800) ubiquitin-like-conjuga ( 220) 1540 365.5 3.9e-101
XP_011541962 (OMIM: 610800) PREDICTED: ubiquitin-l ( 178) 1227 292.8 2.4e-79
XP_005248669 (OMIM: 610800) PREDICTED: ubiquitin-l ( 184) 1023 245.5 4.2e-65
XP_016865433 (OMIM: 610800) PREDICTED: ubiquitin-l ( 184) 1023 245.5 4.2e-65
XP_011541963 (OMIM: 610800) PREDICTED: ubiquitin-l ( 150) 1018 244.3 8.2e-65
>>XP_005248668 (OMIM: 610800) PREDICTED: ubiquitin-like- (220 aa)
initn: 1540 init1: 1540 opt: 1540 Z-score: 1936.6 bits: 365.5 E(85289): 3.9e-101
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
130 140 150 160 170 180
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
XP_005 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
190 200 210 220
>>XP_005248667 (OMIM: 610800) PREDICTED: ubiquitin-like- (220 aa)
initn: 1540 init1: 1540 opt: 1540 Z-score: 1936.6 bits: 365.5 E(85289): 3.9e-101
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
130 140 150 160 170 180
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
XP_005 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
190 200 210 220
>>NP_113670 (OMIM: 610800) ubiquitin-like-conjugating en (220 aa)
initn: 1540 init1: 1540 opt: 1540 Z-score: 1936.6 bits: 365.5 E(85289): 3.9e-101
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
130 140 150 160 170 180
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
NP_113 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
190 200 210 220
>>NP_001124500 (OMIM: 610800) ubiquitin-like-conjugating (220 aa)
initn: 1540 init1: 1540 opt: 1540 Z-score: 1936.6 bits: 365.5 E(85289): 3.9e-101
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
130 140 150 160 170 180
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
NP_001 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
190 200 210 220
>>XP_011541962 (OMIM: 610800) PREDICTED: ubiquitin-like- (178 aa)
initn: 1227 init1: 1227 opt: 1227 Z-score: 1545.6 bits: 292.8 E(85289): 2.4e-79
Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 178 aa overlap (43-220:1-178)
20 30 40 50 60 70
pF1KE0 QRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLGASTHGQTCLPME
::::::::::::::::::::::::::::::
XP_011 MCKIHFQIKNGSVMSHLGASTHGQTCLPME
10 20 30
80 90 100 110 120 130
pF1KE0 EAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGV
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 HECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKNVNYITSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKNVNYITSW
100 110 120 130 140 150
200 210 220
pF1KE0 LSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::
XP_011 LSIVGPVVGLNLPLSYAKATSQDERNVP
160 170
>>XP_005248669 (OMIM: 610800) PREDICTED: ubiquitin-like- (184 aa)
initn: 1023 init1: 1023 opt: 1023 Z-score: 1289.7 bits: 245.5 E(85289): 4.2e-65
Smith-Waterman score: 1195; 83.6% identity (83.6% similar) in 220 aa overlap (1-220:1-184)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::
XP_005 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSK------------------------
10 20 30
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ------------EAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
40 50 60 70 80
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
90 100 110 120 130 140
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
XP_005 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
150 160 170 180
>>XP_016865433 (OMIM: 610800) PREDICTED: ubiquitin-like- (184 aa)
initn: 1023 init1: 1023 opt: 1023 Z-score: 1289.7 bits: 245.5 E(85289): 4.2e-65
Smith-Waterman score: 1195; 83.6% identity (83.6% similar) in 220 aa overlap (1-220:1-184)
10 20 30 40 50 60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
::::::::::::::::::::::::::::::::::::
XP_016 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSK------------------------
10 20 30
70 80 90 100 110 120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ------------EAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
40 50 60 70 80
130 140 150 160 170 180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
90 100 110 120 130 140
190 200 210 220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::
XP_016 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
150 160 170 180
>>XP_011541963 (OMIM: 610800) PREDICTED: ubiquitin-like- (150 aa)
initn: 1018 init1: 1018 opt: 1018 Z-score: 1284.6 bits: 244.3 E(85289): 8.2e-65
Smith-Waterman score: 1018; 99.3% identity (99.3% similar) in 150 aa overlap (71-220:1-150)
50 60 70 80 90 100
pF1KE0 GYMCKIHFQIKNGSVMSHLGASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHV
: ::::::::::::::::::::::::::::
XP_011 MLEAFELPLDDCEVIETAAASEVIKYEYHV
10 20 30
110 120 130 140 150 160
pF1KE0 LYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 FVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
100 110 120 130 140 150
220 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:11:57 2016 done: Thu Nov 3 22:11:58 2016
Total Scan time: 6.020 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]