Result of FASTA (omim) for
pF1KE0180
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0180, 218 aa
1>>>pF1KE0180 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9105+/-0.000315; mu= 16.2473+/- 0.020
mean_var=63.6913+/-13.145, 0's: 0 Z-trim(116.2): 27 B-trim: 14 in 2/55
Lambda= 0.160707
statistics sampled from 27124 (27151) to 27124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.318), width: 16
Scan time: 6.570
The best scores are: opt bits E(85289)
XP_006711995 (OMIM: 616757) PREDICTED: transmembra ( 218) 1435 340.8 1e-93
XP_011530810 (OMIM: 616757) PREDICTED: transmembra ( 218) 1435 340.8 1e-93
XP_016858796 (OMIM: 616757) PREDICTED: transmembra ( 224) 1188 283.6 1.8e-76
XP_016858794 (OMIM: 616757) PREDICTED: transmembra ( 224) 1188 283.6 1.8e-76
XP_016858795 (OMIM: 616757) PREDICTED: transmembra ( 224) 1188 283.6 1.8e-76
XP_011530809 (OMIM: 616757) PREDICTED: transmembra ( 224) 1188 283.6 1.8e-76
XP_011530807 (OMIM: 616757) PREDICTED: transmembra ( 247) 1188 283.6 1.9e-76
XP_006711993 (OMIM: 616757) PREDICTED: transmembra ( 271) 1188 283.6 2.1e-76
NP_001026908 (OMIM: 616757) transmembrane protein ( 271) 1188 283.6 2.1e-76
XP_006711994 (OMIM: 616757) PREDICTED: transmembra ( 271) 1188 283.6 2.1e-76
>>XP_006711995 (OMIM: 616757) PREDICTED: transmembrane p (218 aa)
initn: 1435 init1: 1435 opt: 1435 Z-score: 1803.5 bits: 340.8 E(85289): 1e-93
Smith-Waterman score: 1435; 99.5% identity (100.0% similar) in 218 aa overlap (1-218:1-218)
10 20 30 40 50 60
pF1KE0 MYALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MYALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ALITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ALITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VAYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVS
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
XP_006 VAYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVS
130 140 150 160 170 180
190 200 210
pF1KE0 SDTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
::::::::::::::::::::::::::::::::::::::
XP_006 SDTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210
>>XP_011530810 (OMIM: 616757) PREDICTED: transmembrane p (218 aa)
initn: 1435 init1: 1435 opt: 1435 Z-score: 1803.5 bits: 340.8 E(85289): 1e-93
Smith-Waterman score: 1435; 99.5% identity (100.0% similar) in 218 aa overlap (1-218:1-218)
10 20 30 40 50 60
pF1KE0 MYALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ALITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VAYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVS
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
XP_011 VAYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVS
130 140 150 160 170 180
190 200 210
pF1KE0 SDTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
::::::::::::::::::::::::::::::::::::::
XP_011 SDTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210
>>XP_016858796 (OMIM: 616757) PREDICTED: transmembrane p (224 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1493.9 bits: 283.6 E(85289): 1.8e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:38-224)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_016 HKSVACLLRSRCSKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
130 140 150 160 170 180
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_016 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210 220
>>XP_016858794 (OMIM: 616757) PREDICTED: transmembrane p (224 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1493.9 bits: 283.6 E(85289): 1.8e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:38-224)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_016 HKSVACLLRSRCSKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
130 140 150 160 170 180
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_016 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210 220
>>XP_016858795 (OMIM: 616757) PREDICTED: transmembrane p (224 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1493.9 bits: 283.6 E(85289): 1.8e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:38-224)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_016 HKSVACLLRSRCSKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
130 140 150 160 170 180
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_016 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210 220
>>XP_011530809 (OMIM: 616757) PREDICTED: transmembrane p (224 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1493.9 bits: 283.6 E(85289): 1.8e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:38-224)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_011 HKSVACLLRSRCSKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_011 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
130 140 150 160 170 180
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_011 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
190 200 210 220
>>XP_011530807 (OMIM: 616757) PREDICTED: transmembrane p (247 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1493.3 bits: 283.6 E(85289): 1.9e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:61-247)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_011 KTCCTLDDVPLISKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
40 50 60 70 80 90
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_011 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
160 170 180 190 200 210
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_011 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
220 230 240
>>XP_006711993 (OMIM: 616757) PREDICTED: transmembrane p (271 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1492.7 bits: 283.6 E(85289): 2.1e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:85-271)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_006 KTCCTLDDVPLISKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
60 70 80 90 100 110
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_006 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
180 190 200 210 220 230
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_006 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
240 250 260 270
>>NP_001026908 (OMIM: 616757) transmembrane protein 150A (271 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1492.7 bits: 283.6 E(85289): 2.1e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:85-271)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
NP_001 KTCCTLDDVPLISKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
60 70 80 90 100 110
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
180 190 200 210 220 230
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
NP_001 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
240 250 260 270
>>XP_006711994 (OMIM: 616757) PREDICTED: transmembrane p (271 aa)
initn: 1187 init1: 1187 opt: 1188 Z-score: 1492.7 bits: 283.6 E(85289): 2.1e-76
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:85-271)
10 20 30 40 50 60
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
:. :::::::::::::::::::::::::
XP_006 KTCCTLDDVPLISKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
60 70 80 90 100 110
70 80 90 100 110 120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_006 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
180 190 200 210 220 230
190 200 210
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
:::::::::::::::::::::::::::::::::::::
XP_006 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
240 250 260 270
218 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:27:13 2016 done: Thu Nov 3 22:27:14 2016
Total Scan time: 6.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]