FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0180, 218 aa
  1>>>pF1KE0180 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0668+/-0.000678; mu= 15.1711+/- 0.041
 mean_var=60.1432+/-12.410, 0's: 0 Z-trim(109.5): 12  B-trim: 607 in 1/53
 Lambda= 0.165379
 statistics sampled from 10897 (10904) to 10897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.335), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS33233.1 TMEM150A gene_id:129303|Hs108|chr2     ( 271) 1188 291.3 3.9e-79
CCDS42629.1 TMEM150B gene_id:284417|Hs108|chr19    ( 233)  241 65.3 3.6e-11


>>CCDS33233.1 TMEM150A gene_id:129303|Hs108|chr2          (271 aa)
 initn: 1187 init1: 1187 opt: 1188  Z-score: 1534.2  bits: 291.3 E(32554): 3.9e-79
Smith-Waterman score: 1188; 97.3% identity (98.4% similar) in 187 aa overlap (32-218:85-271)

              10        20        30        40        50        60 
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
                                     :.   :::::::::::::::::::::::::
CCDS33 KTCCTLDDVPLISKCGSYPPESCLFSLIGNMGAFMVALICLLRYGQLLEQSRHSWVNTTA
           60        70        80        90       100       110    

              70        80        90       100       110       120 
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCALSYQGATAPLDLAV
          120       130       140       150       160       170    

             130       140       150       160       170       180 
pF1KE0 AYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS33 AYLRSVLAVIAFITLVLSGVFFVHESSQLQHGAALCEWVCVIDILIFYGTFSYEFGAVSS
          180       190       200       210       220       230    

             190       200       210        
pF1KE0 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
       :::::::::::::::::::::::::::::::::::::
CCDS33 DTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
          240       250       260       270 

>>CCDS42629.1 TMEM150B gene_id:284417|Hs108|chr19         (233 aa)
 initn: 220 init1: 153 opt: 241  Z-score: 314.1  bits: 65.3 E(32554): 3.6e-11
Smith-Waterman score: 241; 32.1% identity (57.4% similar) in 162 aa overlap (32-192:61-217)

              10        20        30        40        50        60 
pF1KE0 YALWRTGPTTSPALLTLLSKGVPRPAAPWTMSPSSVALICLLRYGQLLEQSRHSWVNTTA
                                     :. . .: ::..:: :: . . . : :   
CCDS42 RTVDLSKGFPYISICGSFPPQSCIFSQVLNMGAALAAWICIVRYHQLRDWGVRRWPNQLI
               40        50        60        70        80        90

              70        80        90       100        110       120
pF1KE0 LITGCTNAAGLLVVGNFQVDHARSLHYVGAGVAFPAGLLFVCLHCAL-SYQGATAPLDLA
       : ::   : :  ::::::  . :  : .:: .::  : ..  :.  :   .    :    
CCDS42 LWTGLLCALGTSVVGNFQEKNQRPTHLAGAFLAFILGNVYFWLQLLLWRLKRLPQPGAAW
              100       110       120       130       140       150

              130       140       150       160       170       180
pF1KE0 VAYLRSVLAVIAFITLVLSGVFFVHESSRLQHGAALCEWVCVIDILIFYGTFSYEFGAVS
       .. ::  :.. .  :... ... .:  : :.  .: :::: .. .. ..: .. .:.:. 
CCDS42 IGPLR--LGLCSVCTILIVAMIVLHACS-LRSVSAACEWVVAMLLFALFGLLAVDFSALE
                160       170        180       190       200       

              190       200       210        
pF1KE0 SDTLVAALQPTPGRACKSSGSSSTSTHLNCAPESIAMI
       : ::   .:: :                          
CCDS42 SCTL--CVQPWPSLSPPPASPISLPVQL          
       210         220       230             




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:27:13 2016 done: Thu Nov  3 22:27:13 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]