Result of FASTA (omim) for
pF1KE0178
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0178, 347 aa
1>>>pF1KE0178 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0040+/-0.000303; mu= 18.5024+/- 0.019
mean_var=70.8345+/-13.891, 0's: 0 Z-trim(118.4): 18 B-trim: 107 in 1/51
Lambda= 0.152388
statistics sampled from 31216 (31235) to 31216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.366), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
XP_016865923 (OMIM: 616642) PREDICTED: bombesin re ( 347) 2452 547.7 1.3e-155
XP_011512679 (OMIM: 616642) PREDICTED: bombesin re ( 347) 2452 547.7 1.3e-155
XP_016865922 (OMIM: 616642) PREDICTED: bombesin re ( 347) 2452 547.7 1.3e-155
XP_016865921 (OMIM: 616642) PREDICTED: bombesin re ( 347) 2452 547.7 1.3e-155
NP_001273564 (OMIM: 616642) bombesin receptor-acti ( 347) 2452 547.7 1.3e-155
NP_689947 (OMIM: 616642) bombesin receptor-activat ( 354) 2452 547.7 1.4e-155
NP_001273566 (OMIM: 616642) bombesin receptor-acti ( 241) 1760 395.5 6.4e-110
NP_001273565 (OMIM: 616642) bombesin receptor-acti ( 241) 1760 395.5 6.4e-110
>>XP_016865923 (OMIM: 616642) PREDICTED: bombesin recept (347 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.5 bits: 547.7 E(85289): 1.3e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
250 260 270 280 290 300
310 320 330 340
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::::::::::::::::::: ::::::::::::::::::::
XP_016 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340
>>XP_011512679 (OMIM: 616642) PREDICTED: bombesin recept (347 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.5 bits: 547.7 E(85289): 1.3e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
250 260 270 280 290 300
310 320 330 340
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::::::::::::::::::: ::::::::::::::::::::
XP_011 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340
>>XP_016865922 (OMIM: 616642) PREDICTED: bombesin recept (347 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.5 bits: 547.7 E(85289): 1.3e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
250 260 270 280 290 300
310 320 330 340
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::::::::::::::::::: ::::::::::::::::::::
XP_016 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340
>>XP_016865921 (OMIM: 616642) PREDICTED: bombesin recept (347 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.5 bits: 547.7 E(85289): 1.3e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
250 260 270 280 290 300
310 320 330 340
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::::::::::::::::::: ::::::::::::::::::::
XP_016 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340
>>NP_001273564 (OMIM: 616642) bombesin receptor-activate (347 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.5 bits: 547.7 E(85289): 1.3e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
250 260 270 280 290 300
310 320 330 340
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340
>>NP_689947 (OMIM: 616642) bombesin receptor-activated p (354 aa)
initn: 2452 init1: 2452 opt: 2452 Z-score: 2914.3 bits: 547.7 E(85289): 1.4e-155
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:8-354)
10 20 30 40 50
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP
::::.::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MDFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 RKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 RKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 RPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 RPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQ
250 260 270 280 290 300
300 310 320 330 340
pF1KE0 LIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_689 LIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
310 320 330 340 350
>>NP_001273566 (OMIM: 616642) bombesin receptor-activate (241 aa)
initn: 1760 init1: 1760 opt: 1760 Z-score: 2094.4 bits: 395.5 E(85289): 6.4e-110
Smith-Waterman score: 1760; 99.6% identity (99.6% similar) in 241 aa overlap (107-347:1-241)
80 90 100 110 120 130
pF1KE0 FVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPFPDF
::::::::::::::::::::::::::::::
NP_001 MSLPIAKKYMSENKGVPLHGGDEDRPFPDF
10 20 30
140 150 160 170 180 190
pF1KE0 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
160 170 180 190 200 210
320 330 340
pF1KE0 GYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::: ::::::::::::::::::::
NP_001 GYVDTTHWKVYVIARGVQPLVICDGTAFSEL
220 230 240
>>NP_001273565 (OMIM: 616642) bombesin receptor-activate (241 aa)
initn: 1760 init1: 1760 opt: 1760 Z-score: 2094.4 bits: 395.5 E(85289): 6.4e-110
Smith-Waterman score: 1760; 99.6% identity (99.6% similar) in 241 aa overlap (107-347:1-241)
80 90 100 110 120 130
pF1KE0 FVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPFPDF
::::::::::::::::::::::::::::::
NP_001 MSLPIAKKYMSENKGVPLHGGDEDRPFPDF
10 20 30
140 150 160 170 180 190
pF1KE0 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE0 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
160 170 180 190 200 210
320 330 340
pF1KE0 GYVDTTHWKVCVIARGVQPLVICDGTAFSEL
:::::::::: ::::::::::::::::::::
NP_001 GYVDTTHWKVYVIARGVQPLVICDGTAFSEL
220 230 240
347 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:34:22 2016 done: Thu Nov 3 22:34:23 2016
Total Scan time: 8.370 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]