FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0178, 347 aa
  1>>>pF1KE0178 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8976+/-0.000651; mu= 19.2835+/- 0.040
 mean_var=68.5312+/-13.610, 0's: 0 Z-trim(111.5): 9  B-trim: 0 in 0/52
 Lambda= 0.154928
 statistics sampled from 12401 (12406) to 12401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS69100.1 C6orf89 gene_id:221477|Hs108|chr6      ( 347) 2452 556.4 1.2e-158
CCDS4827.1 C6orf89 gene_id:221477|Hs108|chr6       ( 354) 2452 556.5 1.2e-158
CCDS75444.1 C6orf89 gene_id:221477|Hs108|chr6      ( 241) 1760 401.6 3.4e-112


>>CCDS69100.1 C6orf89 gene_id:221477|Hs108|chr6           (347 aa)
 initn: 2452 init1: 2452 opt: 2452  Z-score: 2961.6  bits: 556.4 E(32554): 1.2e-158
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KE0 MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQYPLLIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQC
              250       260       270       280       290       300

              310       320       330       340       
pF1KE0 RRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
       :::::::::::::::::::::::::: ::::::::::::::::::::
CCDS69 RRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
              310       320       330       340       

>>CCDS4827.1 C6orf89 gene_id:221477|Hs108|chr6            (354 aa)
 initn: 2452 init1: 2452 opt: 2452  Z-score: 2961.4  bits: 556.5 E(32554): 1.2e-158
Smith-Waterman score: 2452; 99.4% identity (99.7% similar) in 347 aa overlap (1-347:8-354)

                      10        20        30        40        50   
pF1KE0        MDLAVNEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP
              ::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MDFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE0 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE0 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAP
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KE0 RKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWR
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KE0 RPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQ
              250       260       270       280       290       300

           300       310       320       330       340       
pF1KE0 LIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVCVIARGVQPLVICDGTAFSEL
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS48 LIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL
              310       320       330       340       350    

>>CCDS75444.1 C6orf89 gene_id:221477|Hs108|chr6           (241 aa)
 initn: 1760 init1: 1760 opt: 1760  Z-score: 2127.8  bits: 401.6 E(32554): 3.4e-112
Smith-Waterman score: 1760; 99.6% identity (99.6% similar) in 241 aa overlap (107-347:1-241)

         80        90       100       110       120       130      
pF1KE0 FVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMSENKGVPLHGGDEDRPFPDF
                                     ::::::::::::::::::::::::::::::
CCDS75                               MSLPIAKKYMSENKGVPLHGGDEDRPFPDF
                                             10        20        30

        140       150       160       170       180       190      
pF1KE0 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQ
               40        50        60        70        80        90

        200       210       220       230       240       250      
pF1KE0 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPK
              100       110       120       130       140       150

        260       270       280       290       300       310      
pF1KE0 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDI
              160       170       180       190       200       210

        320       330       340       
pF1KE0 GYVDTTHWKVCVIARGVQPLVICDGTAFSEL
       :::::::::: ::::::::::::::::::::
CCDS75 GYVDTTHWKVYVIARGVQPLVICDGTAFSEL
              220       230       240 




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:34:21 2016 done: Thu Nov  3 22:34:22 2016
 Total Scan time:  2.580 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]