FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0172, 317 aa
  1>>>pF1KE0172 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1602+/-0.000819; mu= 16.6148+/- 0.049
 mean_var=63.9572+/-12.911, 0's: 0 Z-trim(106.8): 19  B-trim: 536 in 1/50
 Lambda= 0.160372
 statistics sampled from 9179 (9189) to 9179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.282), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS7416.1 PPP1R3C gene_id:5507|Hs108|chr10        ( 317) 2202 518.0 3.7e-147
CCDS5973.1 PPP1R3B gene_id:79660|Hs108|chr8        ( 285)  773 187.4 1.2e-47
CCDS13483.1 PPP1R3D gene_id:5509|Hs108|chr20       ( 299)  340 87.2 1.7e-17
CCDS5759.1 PPP1R3A gene_id:5506|Hs108|chr7         (1122)  337 86.8 8.4e-17


>>CCDS7416.1 PPP1R3C gene_id:5507|Hs108|chr10             (317 aa)
 initn: 2202 init1: 2202 opt: 2202  Z-score: 2755.3  bits: 518.0 E(32554): 3.7e-147
Smith-Waterman score: 2202; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KE0 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPVKSFLGPYDEFQRRHFVNKLKPLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MSCTRMIQVLDPRPLTSSVMPVDVAMRLCLAHSPPVKSFLGPYDEFQRRHFVNKLKPLKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CLNIKHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQFDLLDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CLNIKHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQFDLLDLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCISYHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCISYHA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NGQVFWDNNDGQNYRIVHVQWKPDGVQTQMAPQDCAFHQTSPKTELESTIFGSPRLASGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NGQVFWDNNDGQNYRIVHVQWKPDGVQTQMAPQDCAFHQTSPKTELESTIFGSPRLASGL
              250       260       270       280       290       300

              310       
pF1KE0 FPEWQSWGRMENLASYR
       :::::::::::::::::
CCDS74 FPEWQSWGRMENLASYR
              310       

>>CCDS5973.1 PPP1R3B gene_id:79660|Hs108|chr8             (285 aa)
 initn: 689 init1: 529 opt: 773  Z-score: 969.2  bits: 187.4 E(32554): 1.2e-47
Smith-Waterman score: 773; 40.5% identity (71.8% similar) in 301 aa overlap (19-316:1-284)

               10        20         30        40        50         
pF1KE0 MSCTRMIQVLDPRPLTSSVMPVDVAMRL-CLAHSPPVKSFLGPYDEFQRRHFVNKLKPLK
                         .: ::. .:  :.:  : ...     ..:  .   .  :::.
CCDS59                   MMAVDIEYRYNCMA--PSLRQ-----ERFAFKISPKPSKPLR
                                 10               20        30     

      60          70        80        90       100       110       
pF1KE0 SCLNI--KHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQFDLL
        :...  :..:...     .....:::: :::..::.:: ..:::.. ..:  :. :.. 
CCDS59 PCIQLSSKNEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DMPFNIT
          40        50        60        70        80          90   

       120       130       140       150       160       170       
pF1KE0 DLNDISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKN
       .: :   .:   : ....::: :::.:::.::...: . :::::: :......:::::.:
CCDS59 ELLDNIVSLTTAESESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQN
           100       110       120       130       140       150   

       180       190       200       210       220       230       
pF1KE0 VSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCIS
       ..::: :.::.:::.::.:::  : :.:..:.:.: ::::: :.::  : . ...:: . 
CCDS59 LAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERMEFAVY
           160       170       180       190       200       210   

       240       250       260       270       280       290       
pF1KE0 YHANGQVFWDNNDGQNYRIVHVQWKPDGVQTQMAPQDCAFHQTSPKTELESTIFGSPRLA
       :. :::..::.: :.::::.... :  ..: .  :      ...:   .    ::::: .
CCDS59 YECNGQTYWDSNRGKNYRIIRAELK--STQGMTKP------HSGPDLGISFDQFGSPRCS
           220       230         240             250       260     

       300       310       
pF1KE0 SGLFPEWQSWGRMENLASYR
        :::::: :.  .:.:. : 
CCDS59 YGLFPEWPSYLGYEKLGPYY
         270       280     

>>CCDS13483.1 PPP1R3D gene_id:5509|Hs108|chr20            (299 aa)
 initn: 270 init1: 155 opt: 340  Z-score: 427.4  bits: 87.2 E(32554): 1.7e-17
Smith-Waterman score: 344; 29.5% identity (58.5% similar) in 275 aa overlap (10-265:19-289)

                        10         20          30             40   
pF1KE0          MSCTRMIQVLDPRPLTS-SVMPVDVAM--RLCL-----AHSPPVKSFLGPY
                         : :: :.  : .   ::.  : :      ...::     .  
CCDS13 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
               10        20        30        40        50        60

            50        60        70        80         90       100  
pF1KE0 DEFQRRHFVNKLKPLKSCLNIKHKAKSQNDWKCSHNQAKK-RVVFADSKGLSLTAIHVFS
       :   :  .. . . : :  . ..:: .     :  . ..: :: :::. :: :. ..:: 
CCDS13 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVF-
               70        80        90       100       110          

            110        120        130         140       150        
pF1KE0 DLPEEPAWDLQ-FDLLDLN-DISSALKHHEE--KNLILDFPQPSTDYLSFRSHFQKNFVC
       .  ..:.  :. .. : .: :.  . .  :   . :. ::: : ..  .:  ..:...::
CCDS13 NAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPP-VEAADFGERLQRQLVC
     120       130       140       150       160        170        

      160       170       180       190       200         210      
pF1KE0 LENCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYG--GTDSDTF
       ::  . ..  ..:::.: ::.:::.: .: ::..:.. :    .  ..  :  ::. :.:
CCDS13 LERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRS-THEAVARWRGPAGPEGTE-DVF
      180       190       200       210        220       230       

        220        230       240       250          260       270  
pF1KE0 SFAIDLPP-VIPTEQKIEFCISYHANGQVFWDNNDGQNYRIV---HVQWKPDGVQTQMAP
       .:.. .:: ..   ....: . :.. :  .::::: ..: ..   :.   : :       
CCDS13 TFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWI
        240       250       260       270       280       290      

            280       290       300       310       
pF1KE0 QDCAFHQTSPKTELESTIFGSPRLASGLFPEWQSWGRMENLASYR
                                                    
CCDS13 HFI                                          
                                                    

>>CCDS5759.1 PPP1R3A gene_id:5506|Hs108|chr7              (1122 aa)
 initn: 272 init1: 229 opt: 337  Z-score: 415.2  bits: 86.8 E(32554): 8.4e-17
Smith-Waterman score: 337; 33.7% identity (63.2% similar) in 190 aa overlap (83-267:62-242)

             60        70        80        90       100       110  
pF1KE0 NKLKPLKSCLNIKHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDL
                                     .:: :::: :..:.... : :  : :. . 
CCDS57 TFQPGFSPQPSRRGSDSSEDIYLDTPSSGTRRVSFADSFGFNLVSVKEF-DCWELPSAST
              40        50        60        70        80         90

            120       130         140       150       160       170
pF1KE0 QFDLLDLNDISSALKHHEEKNL--ILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVT
        :::      .. . : ::  :  ..:.:. . : .. . ..:: ..   .  :   .. 
CCDS57 TFDL------GTDIFHTEEYVLAPLFDLPSSKEDLMQ-QLQIQKAILESTESLLGSTSIK
                    100       110       120        130       140   

              180       190       200       210       220          
pF1KE0 GTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDL-PPVIPTE
       : ..: :::::: : .:...:.:... :.   :. :   : ..: ::: : : ::     
CCDS57 GIIRVLNVSFEKLVYVRMSLDDWQTHYDILAEYVPNSCDG-ETDQFSFKIVLVPPYQKDG
           150       160       170       180        190       200  

     230       240       250         260       270       280       
pF1KE0 QKIEFCISYHANGQVFWDNNDGQNYRIV--HVQWKPDGVQTQMAPQDCAFHQTSPKTELE
       .:.:::: :...  .::.::.: :: ..  . . .:. :.                    
CCDS57 SKVEFCIRYETSVGTFWSNNNGTNYTFICQKKEQEPEPVKPWKEVPNRQIKGCLKVKSSK
            210       220       230       240       250       260  

       290       300       310                                     
pF1KE0 STIFGSPRLASGLFPEWQSWGRMENLASYR                              
                                                                   
CCDS57 EESSVTSEENNFENPKNTDTYIPTIICSHEDKEDLEASNRNVKDVNREHDEHNEKELELM
            270       280       290       300       310       320  




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:55:06 2016 done: Thu Nov  3 22:55:06 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]