Result of FASTA (ccds) for
pF1KE0171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0171, 222 aa
1>>>pF1KE0171 222 - 222 aa - 222 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3400+/-0.000724; mu= 13.3257+/- 0.044
mean_var=59.2742+/-11.775, 0's: 0 Z-trim(108.3): 16 B-trim: 24 in 2/49
Lambda= 0.166587
statistics sampled from 10137 (10145) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.312), width: 16
Scan time: 2.120
The best scores are: opt bits E(32554)
CCDS5265.1 SOD2 gene_id:6648|Hs108|chr6 ( 222) 1536 377.1 4.8e-105
CCDS83141.1 SOD2 gene_id:6648|Hs108|chr6 ( 176) 1223 301.9 1.7e-82
CCDS83143.1 SOD2 gene_id:6648|Hs108|chr6 ( 162) 785 196.6 7.8e-51
CCDS34564.1 SOD2 gene_id:6648|Hs108|chr6 ( 183) 765 191.8 2.4e-49
CCDS83142.1 SOD2 gene_id:6648|Hs108|chr6 ( 140) 513 131.2 3.3e-31
>>CCDS5265.1 SOD2 gene_id:6648|Hs108|chr6 (222 aa)
initn: 1536 init1: 1536 opt: 1536 Z-score: 1999.4 bits: 377.1 E(32554): 4.8e-105
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
130 140 150 160 170 180
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
CCDS52 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
190 200 210 220
>>CCDS83141.1 SOD2 gene_id:6648|Hs108|chr6 (176 aa)
initn: 1223 init1: 1223 opt: 1223 Z-score: 1594.4 bits: 301.9 E(32554): 1.7e-82
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)
20 30 40 50 60 70
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
::::::::::::::::::::::::::::::
CCDS83 MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
10 20 30
80 90 100 110 120 130
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
100 110 120 130 140 150
200 210 220
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::
CCDS83 RPDYLKAIWNVINWENVTERYMACKK
160 170
>>CCDS83143.1 SOD2 gene_id:6648|Hs108|chr6 (162 aa)
initn: 785 init1: 785 opt: 785 Z-score: 1026.1 bits: 196.6 E(32554): 7.8e-51
Smith-Waterman score: 990; 73.0% identity (73.0% similar) in 222 aa overlap (1-222:1-162)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKG-----
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
:::::
CCDS83 -------------------------------------------------------LIPLL
120
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
CCDS83 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
130 140 150 160
>>CCDS34564.1 SOD2 gene_id:6648|Hs108|chr6 (183 aa)
initn: 765 init1: 765 opt: 765 Z-score: 999.3 bits: 191.8 E(32554): 2.4e-49
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::: :::::
CCDS34 NLNVTEEKYQEALAKG---------------------------------------ELLEA
70 80
130 140 150 160 170 180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
90 100 110 120 130 140
190 200 210 220
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
::::::::::::::::::::::::::::::::::::::::::
CCDS34 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
150 160 170 180
>>CCDS83142.1 SOD2 gene_id:6648|Hs108|chr6 (140 aa)
initn: 513 init1: 513 opt: 513 Z-score: 673.8 bits: 131.2 E(32554): 3.3e-31
Smith-Waterman score: 513; 95.1% identity (96.3% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
:::::::::::::::: :.
CCDS83 NLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGLSVEENSLRICTGSEFSRH
70 80 90 100 110 120
222 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:00:00 2016 done: Thu Nov 3 23:00:00 2016
Total Scan time: 2.120 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]