FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0165, 187 aa
  1>>>pF1KE0165 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3230+/-0.000858; mu= 8.6497+/- 0.051
 mean_var=91.5822+/-18.063, 0's: 0 Z-trim(108.6): 20  B-trim: 81 in 2/49
 Lambda= 0.134020
 statistics sampled from 10335 (10344) to 10335 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1           ( 187) 1198 241.1 2.9e-64
CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19         ( 210)  706 146.0 1.4e-35
CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182)  684 141.8 2.4e-34
CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182)  682 141.4 3.1e-34


>>CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1                (187 aa)
 initn: 1198 init1: 1198 opt: 1198  Z-score: 1267.2  bits: 241.1 E(32554): 2.9e-64
Smith-Waterman score: 1198; 99.5% identity (99.5% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KE0 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMALRGKFKRPPLRRVRVSA
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS14 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMDLRGKFKRPPLRRVRVSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPVEVGDWRKNVEAMSGMEGRKKMFDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPVEVGDWRKNVEAMSGMEGRKKMFDA
              130       140       150       160       170       180

              
pF1KE0 AKSPTSQ
       :::::::
CCDS14 AKSPTSQ
              

>>CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19              (210 aa)
 initn: 708 init1: 584 opt: 706  Z-score: 752.3  bits: 146.0 E(32554): 1.4e-35
Smith-Waterman score: 706; 62.6% identity (82.1% similar) in 179 aa overlap (2-180:33-210)

                                            10        20        30 
pF1KE0                              MPEVERKPKITASRKLLLKSLMLAKAKECWE
                                     :....: ::.::::: ::.:.:  ::.  :
CCDS42 DGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELE
             10        20        30        40        50        60  

              40        50        60        70        80        90 
pF1KE0 QEHEEREAEKVRYLAERIPTLQTRGLSLSALQDLCRELHAKVEVVDEERYDIEAKCLHNT
       .: :::..:: : :. :   :.  ::... ::::::.:::.:. :::::::::::  .: 
CCDS42 REAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNI
             70        80        90       100       110       120  

             100       110       120       130       140       150 
pF1KE0 REIKDLKLKVMALRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTE
        :: ::  :.. :::::::: :::::.:::::..::::.. : :.::::.::.:::::::
CCDS42 TEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTE
            130       140       150       160       170       180  

             160       170       180       
pF1KE0 KERPVEVGDWRKNVEAMSGMEGRKKMFDAAKSPTSQ
       ::   ::::::::..:.:::::::: :..       
CCDS42 KENR-EVGDWRKNIDALSGMEGRKKKFES       
             190       200       210       

>>CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 570 init1: 448 opt: 684  Z-score: 730.3  bits: 141.8 E(32554): 2.4e-34
Smith-Waterman score: 684; 58.0% identity (82.9% similar) in 181 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE0 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS
       : . :.. .  ..:.  :::.::  :    :.:. .:::::  ::::. : :.  : :.:
CCDS31 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPG-SMS
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMALRGKFKRPPLRRVRVSA
        .:.::..::::.....::.::.:..  ....:..:.. :.. ::::::::::::::.::
CCDS31 EVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSA
      60        70        80        90       100       110         

              130       140       150        160       170         
pF1KE0 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPV-EVGDWRKNVEAMSGMEGRKKMFD
       ::::.::::::::: ::::::::.:::::::::: . .:::::::.:  ::::::::::.
CCDS31 DAMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFE
     120       130       140       150       160       170         

     180       
pF1KE0 AAKSPTSQ
       .       
CCDS31 SES     
     180       

>>CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 570 init1: 448 opt: 682  Z-score: 728.2  bits: 141.4 E(32554): 3.1e-34
Smith-Waterman score: 682; 57.5% identity (82.9% similar) in 181 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE0 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS
       : . ... .  ..:.  :::.::  :    :.:. .:::::  ::::. : :.  : :.:
CCDS53 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPG-SMS
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMALRGKFKRPPLRRVRVSA
        .:.::..::::.....::.::.:..  ....:..:.. :.. ::::::::::::::.::
CCDS53 EVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSA
      60        70        80        90       100       110         

              130       140       150        160       170         
pF1KE0 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPV-EVGDWRKNVEAMSGMEGRKKMFD
       ::::.::::::::: ::::::::.:::::::::: . .:::::::.:  ::::::::::.
CCDS53 DAMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFE
     120       130       140       150       160       170         

     180       
pF1KE0 AAKSPTSQ
       .       
CCDS53 SES     
     180       




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:12:10 2016 done: Thu Nov  3 23:12:11 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]