Result of FASTA (omim) for
pF1KE0164
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0164, 138 aa
1>>>pF1KE0164 138 - 138 aa - 138 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1130+/-0.000342; mu= 7.5815+/- 0.021
mean_var=80.0729+/-15.612, 0's: 0 Z-trim(115.8): 7 B-trim: 40 in 1/53
Lambda= 0.143328
statistics sampled from 26503 (26510) to 26503 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.311), width: 16
Scan time: 4.110
The best scores are: opt bits E(85289)
NP_116211 (OMIM: 616275) protein FAM136A isoform 1 ( 138) 910 197.1 7.5e-51
NP_001316682 (OMIM: 616275) protein FAM136A isofor ( 223) 747 163.5 1.6e-40
NP_001316681 (OMIM: 616275) protein FAM136A isofor ( 245) 746 163.3 2e-40
NP_001316687 (OMIM: 616275) protein FAM136A isofor ( 107) 726 159.0 1.7e-39
NP_001316684 (OMIM: 616275) protein FAM136A isofor ( 107) 726 159.0 1.7e-39
NP_001316686 (OMIM: 616275) protein FAM136A isofor ( 107) 726 159.0 1.7e-39
>>NP_116211 (OMIM: 616275) protein FAM136A isoform 1 [Ho (138 aa)
initn: 910 init1: 910 opt: 910 Z-score: 1033.9 bits: 197.1 E(85289): 7.5e-51
Smith-Waterman score: 910; 98.6% identity (99.3% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_116 MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
70 80 90 100 110 120
130
pF1KE0 LIPTMTKKMKEAPLSIGK
:::::::::::: :::::
NP_116 LIPTMTKKMKEALLSIGK
130
>>NP_001316682 (OMIM: 616275) protein FAM136A isoform 3 (223 aa)
initn: 747 init1: 747 opt: 747 Z-score: 848.5 bits: 163.5 E(85289): 1.6e-40
Smith-Waterman score: 747; 97.3% identity (98.2% similar) in 112 aa overlap (27-138:112-223)
10 20 30 40 50
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIER
. ::::::::::::::::::::::::::::
NP_001 GSFGGSDEIRVPLPCARLFSAPSSPGQERPRRQGLMFRCSASCCEDSQASMKQVHQCIER
90 100 110 120 130 140
60 70 80 90 100 110
pF1KE0 CHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CHVPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVD
150 160 170 180 190 200
120 130
pF1KE0 DHMHLIPTMTKKMKEAPLSIGK
:::::::::::::::: :::::
NP_001 DHMHLIPTMTKKMKEALLSIGK
210 220
>--
initn: 190 init1: 171 opt: 171 Z-score: 204.8 bits: 44.4 E(85289): 0.00011
Smith-Waterman score: 171; 96.6% identity (100.0% similar) in 29 aa overlap (1-29:1-29)
10 20 30 40 50 60
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
:::::::::::::::::.:::::::::::
NP_001 MAELQQLRVQEAVESMVKSLERENIRKMQVAGLGPNQDPLLSGWVPGPSLSHHATPCTAA
10 20 30 40 50 60
>>NP_001316681 (OMIM: 616275) protein FAM136A isoform 2 (245 aa)
initn: 746 init1: 746 opt: 746 Z-score: 846.7 bits: 163.3 E(85289): 2e-40
Smith-Waterman score: 746; 99.1% identity (99.1% similar) in 110 aa overlap (29-138:136-245)
10 20 30 40 50
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCH
::::::::::::::::::::::::::::::
NP_001 PGQERPRRQVGSPWWQALAPPPSPLTRPLPQGLMFRCSASCCEDSQASMKQVHQCIERCH
110 120 130 140 150 160
60 70 80 90 100 110
pF1KE0 VPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPLAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDH
170 180 190 200 210 220
120 130
pF1KE0 MHLIPTMTKKMKEAPLSIGK
:::::::::::::: :::::
NP_001 MHLIPTMTKKMKEALLSIGK
230 240
>--
initn: 190 init1: 171 opt: 171 Z-score: 204.2 bits: 44.4 E(85289): 0.00012
Smith-Waterman score: 171; 96.6% identity (100.0% similar) in 29 aa overlap (1-29:1-29)
10 20 30 40 50 60
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
:::::::::::::::::.:::::::::::
NP_001 MAELQQLRVQEAVESMVKSLERENIRKMQVAGLGPNQDPLLSGWVPGPSLSHHATPCTAA
10 20 30 40 50 60
>>NP_001316687 (OMIM: 616275) protein FAM136A isoform 4 (107 aa)
initn: 726 init1: 726 opt: 726 Z-score: 830.0 bits: 159.0 E(85289): 1.7e-39
Smith-Waterman score: 726; 99.1% identity (99.1% similar) in 107 aa overlap (32-138:1-107)
10 20 30 40 50 60
pF1KE0 AELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL
::::::::::::::::::::::::::::::
NP_001 MFRCSASCCEDSQASMKQVHQCIERCHVPL
10 20 30
70 80 90 100 110 120
pF1KE0 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
40 50 60 70 80 90
130
pF1KE0 IPTMTKKMKEAPLSIGK
::::::::::: :::::
NP_001 IPTMTKKMKEALLSIGK
100
>>NP_001316684 (OMIM: 616275) protein FAM136A isoform 4 (107 aa)
initn: 726 init1: 726 opt: 726 Z-score: 830.0 bits: 159.0 E(85289): 1.7e-39
Smith-Waterman score: 726; 99.1% identity (99.1% similar) in 107 aa overlap (32-138:1-107)
10 20 30 40 50 60
pF1KE0 AELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL
::::::::::::::::::::::::::::::
NP_001 MFRCSASCCEDSQASMKQVHQCIERCHVPL
10 20 30
70 80 90 100 110 120
pF1KE0 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
40 50 60 70 80 90
130
pF1KE0 IPTMTKKMKEAPLSIGK
::::::::::: :::::
NP_001 IPTMTKKMKEALLSIGK
100
>>NP_001316686 (OMIM: 616275) protein FAM136A isoform 4 (107 aa)
initn: 726 init1: 726 opt: 726 Z-score: 830.0 bits: 159.0 E(85289): 1.7e-39
Smith-Waterman score: 726; 99.1% identity (99.1% similar) in 107 aa overlap (32-138:1-107)
10 20 30 40 50 60
pF1KE0 AELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPL
::::::::::::::::::::::::::::::
NP_001 MFRCSASCCEDSQASMKQVHQCIERCHVPL
10 20 30
70 80 90 100 110 120
pF1KE0 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHL
40 50 60 70 80 90
130
pF1KE0 IPTMTKKMKEAPLSIGK
::::::::::: :::::
NP_001 IPTMTKKMKEALLSIGK
100
138 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:13:35 2016 done: Thu Nov 3 23:13:36 2016
Total Scan time: 4.110 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]