FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0164, 138 aa
  1>>>pF1KE0164 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6111+/-0.000762; mu= 10.3721+/- 0.046
 mean_var=75.1991+/-14.494, 0's: 0 Z-trim(109.0): 9  B-trim: 15 in 1/50
 Lambda= 0.147900
 statistics sampled from 10614 (10616) to 10614 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.326), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS1904.1 FAM136A gene_id:84908|Hs108|chr2        ( 138)  910 202.7 5.8e-53


>>CCDS1904.1 FAM136A gene_id:84908|Hs108|chr2             (138 aa)
 initn: 910 init1: 910 opt: 910  Z-score: 1064.3  bits: 202.7 E(32554): 5.8e-53
Smith-Waterman score: 910; 98.6% identity (99.3% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE0 MAELQQLRVQEAVESMVRSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS19 MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
               70        80        90       100       110       120

              130        
pF1KE0 LIPTMTKKMKEAPLSIGK
       :::::::::::: :::::
CCDS19 LIPTMTKKMKEALLSIGK
              130        




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:13:34 2016 done: Thu Nov  3 23:13:35 2016
 Total Scan time:  1.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]