FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0163, 113 aa
  1>>>pF1KE0163 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9991+/-0.000579; mu= 11.0423+/- 0.035
 mean_var=54.0711+/-10.774, 0's: 0 Z-trim(111.3): 9  B-trim: 0 in 0/52
 Lambda= 0.174418
 statistics sampled from 12272 (12275) to 12272 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.377), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS5853.1 FMC1 gene_id:154791|Hs108|chr7          ( 113)  760 198.4 7.9e-52
CCDS59084.1 LUC7L2 gene_id:100996928|Hs108|chr7    ( 458)  578 152.9 1.6e-37


>>CCDS5853.1 FMC1 gene_id:154791|Hs108|chr7               (113 aa)
 initn: 760 init1: 760 opt: 760  Z-score: 1044.0  bits: 198.4 E(32554): 7.9e-52
Smith-Waterman score: 760; 99.1% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE0 MAALGSPAHTFRGLLRELRYLSAATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELH
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAALGSPSHTFRGLLRELRYLSAATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELH
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE0 FQAATYLCLLRSIRKHVALHQEFHGKGERSVEESAGLVGLKLPHQPGGKGWEP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FQAATYLCLLRSIRKHVALHQEFHGKGERSVEESAGLVGLKLPHQPGGKGWEP
               70        80        90       100       110   

>>CCDS59084.1 LUC7L2 gene_id:100996928|Hs108|chr7         (458 aa)
 initn: 578 init1: 578 opt: 578  Z-score: 787.0  bits: 152.9 E(32554): 1.6e-37
Smith-Waterman score: 578; 95.6% identity (98.9% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KE0 MAALGSPAHTFRGLLRELRYLSAATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELH
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAALGSPSHTFRGLLRELRYLSAATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELH
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 FQAATYLCLLRSIRKHVALHQEFHGKGERSVEESAGLVGLKLPHQPGGKGWEP       
       :::::::::::::::::::::::::::. .                              
CCDS59 FQAATYLCLLRSIRKHVALHQEFHGKGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRM
               70        80        90       100       110       120




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:16:13 2016 done: Thu Nov  3 23:16:13 2016
 Total Scan time:  1.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]