FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0159, 244 aa
  1>>>pF1KE0159 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2972+/-0.000337; mu= 14.5489+/- 0.021
 mean_var=68.8111+/-14.020, 0's: 0 Z-trim(115.0): 10  B-trim: 0 in 0/54
 Lambda= 0.154613
 statistics sampled from 25233 (25243) to 25233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.296), width:  16
 Scan time:  6.890

The best scores are:                                      opt bits E(85289)
NP_000311 (OMIM: 261630,612676) dihydropteridine r ( 244) 1609 367.6 1.1e-101
NP_001293069 (OMIM: 261630,612676) dihydropteridin ( 213) 1187 273.4 2.1e-73


>>NP_000311 (OMIM: 261630,612676) dihydropteridine reduc  (244 aa)
 initn: 1609 init1: 1609 opt: 1609  Z-score: 1946.5  bits: 367.6 E(85289): 1.1e-101
Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE0 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
              190       200       210       220       230       240

           
pF1KE0 PAYF
       ::::
NP_000 PAYF
           

>>NP_001293069 (OMIM: 261630,612676) dihydropteridine re  (213 aa)
 initn: 1187 init1: 1187 opt: 1187  Z-score: 1438.7  bits: 273.4 E(85289): 2.1e-73
Smith-Waterman score: 1347; 87.3% identity (87.3% similar) in 244 aa overlap (1-244:1-213)

               10        20        30        40        50        60
pF1KE0 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSF
       :::::::::::::::::::::::::::::::::::                         
NP_001 MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNW-------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE0 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ------VTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH
                40        50        60        70        80         

              130       140       150       160       170       180
pF1KE0 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAV
      90       100       110       120       130       140         

              190       200       210       220       230       240
pF1KE0 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELT
     150       160       170       180       190       200         

           
pF1KE0 PAYF
       ::::
NP_001 PAYF
     210   




244 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:27:28 2016 done: Thu Nov  3 23:27:29 2016
 Total Scan time:  6.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]