FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0157, 129 aa
  1>>>pF1KE0157 129 - 129 aa - 129 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9624+/-0.000327; mu= 12.2739+/- 0.020
 mean_var=53.5058+/-10.473, 0's: 0 Z-trim(114.7): 8  B-trim: 27 in 1/54
 Lambda= 0.175337
 statistics sampled from 24716 (24724) to 24716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.29), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
NP_112202 (OMIM: 611006) iron-sulfur cluster assem ( 129)  823 215.6 1.8e-56
NP_919255 (OMIM: 615317,616370) iron-sulfur cluste ( 154)  176 52.0 3.8e-07


>>NP_112202 (OMIM: 611006) iron-sulfur cluster assembly   (129 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 1135.0  bits: 215.6 E(85289): 1.8e-56
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KE0 MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT
               70        80        90       100       110       120

                
pF1KE0 CGCGESFNI
       :::::::::
NP_112 CGCGESFNI
                

>>NP_919255 (OMIM: 615317,616370) iron-sulfur cluster as  (154 aa)
 initn: 165 init1:  82 opt: 176  Z-score: 249.3  bits: 52.0 E(85289): 3.8e-07
Smith-Waterman score: 176; 25.4% identity (61.5% similar) in 130 aa overlap (1-129:26-152)

                                        10        20        30     
pF1KE0                          MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKI
                                ..:::   . : .:. . .  .. . :: : :...
NP_919 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRL
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KE0 KQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLL
        .. . .     ... :.  ::.:..: .    . . .:.   : :.:: ... .   . 
NP_919 LEITEGSEF---LRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVK
                  70        80        90       100       110       

         100       110        120           
pF1KE0 GTEMDYVEDKLSSEF-VFNNPNIKGTCGCGESFNI  
       :...:. .. . : : :.:::. .  :.:: ::.:  
NP_919 GAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL
       120       130       140       150    




129 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:33:07 2016 done: Thu Nov  3 23:33:07 2016
 Total Scan time:  3.700 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]