FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0157, 129 aa
  1>>>pF1KE0157 129 - 129 aa - 129 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0428+/-0.000695; mu= 11.6161+/- 0.042
 mean_var=51.2602+/-10.253, 0's: 0 Z-trim(108.3): 6  B-trim: 234 in 2/50
 Lambda= 0.179136
 statistics sampled from 10098 (10101) to 10098 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.31), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS35056.1 ISCA1 gene_id:81689|Hs108|chr9         ( 129)  823 219.9 3.4e-58


>>CCDS35056.1 ISCA1 gene_id:81689|Hs108|chr9              (129 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 1158.2  bits: 219.9 E(32554): 3.4e-58
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KE0 MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGT
               70        80        90       100       110       120

                
pF1KE0 CGCGESFNI
       :::::::::
CCDS35 CGCGESFNI
                




129 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:33:06 2016 done: Thu Nov  3 23:33:06 2016
 Total Scan time:  1.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]